Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A12
(917 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 232 3e-61
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.080
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 34 0.19
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 29 4.0
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 5.3
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 29 5.3
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1) 29 7.0
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 29 7.0
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46) 29 7.0
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 9.2
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 9.2
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 232 bits (567), Expect = 3e-61
Identities = 108/151 (71%), Positives = 128/151 (84%)
Frame = +1
Query: 181 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 360
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60
Query: 361 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 540
LPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61 LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120
Query: 541 QALSIPTKISKGTIEIINDVHILKPGDKVGA 633
QAL+IPTKI++GTIEIINDVH++K +K+ A
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.080
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 295 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 411
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 33.9 bits (74), Expect = 0.19
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -3
Query: 597 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWG 475
I+D NS + R K+LEERGLL+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 436 ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 609
E ++ +PA +P S+ TGL P S Q LS+ T + ++ D+
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128
Query: 610 KPGDK 624
PG K
Sbjct: 2129 TPGKK 2133
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 29.5 bits (63), Expect = 4.0
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = +2
Query: 212 SWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*C-AKPSKTTWTTIQPSRNCCHTSRATLA 388
S VP+T + + + P + + + T KP + + CC+ +A A
Sbjct: 580 SSVPLTQFQAQLQQQQPAQATPTNAATQDTDSAPCKPICLKFCVTLCPQKCCNKGKAAAA 639
Query: 389 SCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP----PTTPA 514
+ +P + + T T++ + P P C P P+ PA
Sbjct: 640 AAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPSCPA 685
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 503 WAGMTTDNGAMAPGRAGAWTLFSNSL 426
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 29.1 bits (62), Expect = 5.3
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Frame = -1
Query: 779 PAWNLARRSSGLMSRISGAKIVPESY-TCLTTRPYENGEMFNMLRRVASEAPTLSP---G 612
P+ N S L GA P + T T+ PY + AS +PT+SP
Sbjct: 1193 PSTNNDPVSQPLFITTPGALFTPLPHETSATSPPYTSASPVPTTTPSASSSPTISPIGSS 1252
Query: 611 FKMCTSLMISIVPFEILVGIERAWKKEVFS------GPRPVLWAGMTTDNGAMAP 465
C+++ P +G ERA ++ S G P++ G NG P
Sbjct: 1253 LAQCSTVDSMDKPSLRPIGTERACRRATASPLPSMPGISPLIGGGKLVGNGDSVP 1307
>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
Length = 939
Score = 28.7 bits (61), Expect = 7.0
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -1
Query: 734 ISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 561
+S + +VP+SY TRP NG+ + + A E P+L+ F+ L +I + I
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218
Query: 560 VGIERAWK 537
+ AWK
Sbjct: 219 NAFDMAWK 226
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 28.7 bits (61), Expect = 7.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 629 PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 513
P P F+ C +L+ ++ ++ + RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878
>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
Length = 320
Score = 28.7 bits (61), Expect = 7.0
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +1
Query: 625 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 792
+ S + + +L +SP YG+ + +G +F IL + PE + + A VA
Sbjct: 82 IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141
Query: 793 AALSLAIGYP-TIASAPHSLPMVSKTFG 873
A +LAI ++ SLP V T G
Sbjct: 142 ALTTLAIYLLFGLSLLGLSLPQVLVTLG 169
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 9.2
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Frame = +1
Query: 523 EKTSFFQALSIP---TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSY-GLV 690
E S Q+ + P T++S G+ + V +KP + G + T ++ N+S S
Sbjct: 2269 EPVSIMQSQNTPPVETELSAGSRTSLPKVSAIKPSVEYGQLDDTEIHETNLSASSIPSEK 2328
Query: 691 VKQVYDSGTIFAPEILDI 744
VK ++ S T+ P L I
Sbjct: 2329 VKSLFMSSTLDTPSSLSI 2346
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 440 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 330
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 195 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 299
VPKMFH RG+ T+A P + T +L+ R G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,265,907
Number of Sequences: 59808
Number of extensions: 672305
Number of successful extensions: 1886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1881
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -