Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A12
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.73 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.73 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   2.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   9.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   9.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   9.0  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 616 GDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAP 729
           G+  G S  +L     ISP + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSLHL---ISPVTRGLVRRGILQSGTLNAP 285


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 616 GDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAP 729
           G+  G S  +L     ISP + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSLHL---ISPVTRGLVRRGILQSGTLNAP 285


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 273 LQYRAHGKKHNDAQSHQRPPGQQSSPRETVATHQGQRWLR 392
           LQ   H  +    Q H RP  QQ   ++     Q +R LR
Sbjct: 144 LQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRLR 183


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 605 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTD 483
           +C   ++ +  +  L      WK     GP+PV + G T D
Sbjct: 8   LCGIAVLFLALYYYLTSTFDFWKSRGVVGPKPVPFFGTTKD 48


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 401 RVNTKPTLPLMCGNSFSRAGLL 336
           R +T P    +CG +FSR  LL
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLL 58


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 368 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 276
           CG  +   GLLS   L+   I V+F P+  I+
Sbjct: 202 CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 233


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 368 CGNSFSRAGLLSRWSLMALRIIVFF-PMSTIL 276
           CG  +   GLLS   L+   I V+F P+  I+
Sbjct: 78  CGTDYFNRGLLSASYLVCYGIWVYFVPLFLII 109


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 534 FLPGSFYPYQDFKGYY*NHQ 593
           FLP S++P+Q     Y  H+
Sbjct: 311 FLPPSYHPHQHHPSQYHPHR 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,761
Number of Sequences: 438
Number of extensions: 6239
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)