Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A11
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.55
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.7
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.2
04_04_1667 + 35211776-35212132,35212640-35212727,35213573-352137... 30 2.9
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.9
03_05_0505 + 24991699-24991921,24992100-24992665 29 5.2
01_01_0084 - 636835-637965 29 6.8
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 28 9.0
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 9.0
04_03_0562 + 17190443-17190520,17190715-17190853,17190943-171910... 28 9.0
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 9.0
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 9.0
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.55
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 313 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 149
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 366 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 518
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 211 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 327
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>04_04_1667 +
35211776-35212132,35212640-35212727,35213573-35213705,
35213806-35214616
Length = 462
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 711 PXSGXVPGAAFPGKTXGTLPRELPPSPRSWXCTALDRSVTSHAPD 577
P S PG PG+ LPR S RS + S+T H+ D
Sbjct: 267 PASAVEPGGIVPGQPKELLPRLFEESFRSMATSFSKYSITDHSTD 311
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 226 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 137
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>03_05_0505 + 24991699-24991921,24992100-24992665
Length = 262
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -2
Query: 704 AAXCPGRRFPERHXEHCHASFHLRHGPGXAPHWTDPSHP 588
A C G R P HA LRHG G W DP+ P
Sbjct: 55 ARCCAGPRPPAT----AHACALLRHGGGDGDGWADPAAP 89
>01_01_0084 - 636835-637965
Length = 376
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 693 PGAAFPGKTXGTLPRELPPSPRSWXCTALDRSVTSHA 583
PGAA P T LP ++PPS W + D ++ + A
Sbjct: 28 PGAAPPPPTSSALPTQIPPS--DWSLSPADPALATAA 62
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 660 TLPRELPPSPRSWXCTALDRSVTSHAPDSN 571
TLPR+ P+P+S+ LD V PD++
Sbjct: 496 TLPRQPSPAPQSYLVPPLDEHVPPPQPDTS 525
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 98 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 253
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>04_03_0562 +
17190443-17190520,17190715-17190853,17190943-17191034,
17191681-17191989,17192817-17193506
Length = 435
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 719 GXGXXAAXCPGRRFPERHXEHCHAS 645
G G A C GRR P RH H A+
Sbjct: 131 GRGGAAGACKGRRKPARHDWHVQAA 155
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 395 GRGERSPRRWLQPRLAVPRQASTSVPRTP 309
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 340 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 173
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,088,598
Number of Sequences: 37544
Number of extensions: 626535
Number of successful extensions: 1919
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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