Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A08
         (857 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    26   0.33 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   3.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   7.1  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 401 GSTRHHGQWQEPPPN 445
           G  RHHGQW   P N
Sbjct: 68  GVIRHHGQWNYSPDN 82


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +1

Query: 421 SVARAAAKSDKIRKKL---RWAWKQLRRFSRRHKDPTAGTEGGARQNPGPVVSR 573
           + AR AA++D     L   R A  Q RR +       AG   G R+ PGP  SR
Sbjct: 288 AAARGAARADGAGGPLHDHRPALAQQRRVAAVQVPQLAG---GGRRGPGPARSR 338


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 262 RKAVGQWLRLPADVPKAY 315
           RK  G W R+P D  K +
Sbjct: 226 RKVCGVWKRIPHDYRKRF 243


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,345
Number of Sequences: 336
Number of extensions: 4707
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)