Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A08
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    30   0.48 
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    29   0.84 
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   3.4  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   6.0  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = -2

Query: 730 RRHQSRAQLRKVSAEVPPTIQFEAEVPKTGHPDPDADASDHEVGTQRRRSSRPVKQQGLG 551
           RR ++R   R V  E+P   Q E E   T  PD  ADA + E+ T+ +R  R V +  + 
Sbjct: 538 RRRRNRTAQRVV--EIPNETQTEDEQDGTNTPDNRADAEEREL-TRSQRIYRTVVRTIVA 594

Query: 550 F 548
           F
Sbjct: 595 F 595


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 761 RLEAAGSKSRPSPSVEGPTSQSERGSST 678
           +L   G  SRP+P V+  TS ++ GSST
Sbjct: 216 KLRKPGVNSRPAPPVQDVTSSTKYGSST 243


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 474 PPQFLTNLIRFGGGSCH*PW*RVEPPETPHNEVRDG 367
           PP F+T++ + G  S H     V      HNEV DG
Sbjct: 237 PPNFVTSINKAGSSSDHGGELHVTYCPVDHNEVSDG 272


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
 Frame = +2

Query: 395 SGGSTRHHGQWQEP----PPNLIRFVRNCGGPGNSSAGSAVVTRIRRLGPKVALDKTQAL 562
           S   +R  GQ  EP    PP  I+   +  G GN SA    ++        VAL+ T  +
Sbjct: 68  SEAKSREFGQRSEPSPPPPPEGIKIKISTKGAGNPSAKKLKISTEETSDTNVALNNTSEI 127

Query: 563 LFHGPGRAPPLGA 601
                  + P  A
Sbjct: 128 SHKSSNNSQPKDA 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,550,098
Number of Sequences: 5004
Number of extensions: 73175
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)