Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A08
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                104   1e-22
SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)                104   1e-22
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   3e-21
SB_50245| Best HMM Match : RVT_1 (HMM E-Value=1.4e-16)                 64   1e-10
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.69 
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)                   30   2.1  
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 29   3.7  
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    29   4.8  
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)                29   4.8  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   29   6.4  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     28   8.5  
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)               28   8.5  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              28   8.5  

>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score =  104 bits (249), Expect = 1e-22
 Identities = 53/130 (40%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
 Frame = +1

Query: 16   GKPLRQVSCVERWRYLGVDFEASGC---VTLEHSISSALNNISRAPLKPQQRLEILRAHL 186
            GK +  +     +RYLG+   A G          ++  L NI+RAPLKP QRL +L+ + 
Sbjct: 835  GKVVPSIGPTSDYRYLGILISAGGARVRTDCREILTEGLKNITRAPLKPHQRLILLKTYF 894

Query: 187  IPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRA 366
            +PRF H  V   ++D  LR  D  +R A   WL+LP D   A++HAA+ DGGL IPS+R 
Sbjct: 895  LPRFMHQLVLAPVNDGFLRWFDNCVRAACRSWLKLPHDTCMAFFHAAILDGGLGIPSLRY 954

Query: 367  TIPDLIVRRF 396
             +P L   RF
Sbjct: 955  LVPLLKRDRF 964


>SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)
          Length = 583

 Score =  104 bits (249), Expect = 1e-22
 Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
 Frame = +1

Query: 16  GKPLRQVSCVERWRYLGVDFEASGCVTLEHS-ISSALNNISRAPLKPQQRLEILRAHLIP 192
           G  +R +   E ++YLG++  A G    E++    AL+N+SRAPLKPQQRL +L+ +L+P
Sbjct: 273 GGEIRSLVANETYKYLGINIGAQGVKAAEYNAFKEALDNLSRAPLKPQQRLFLLKTYLLP 332

Query: 193 RFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATI 372
           +  H  V    +   L  LD  +RKAV  WL+LP D  +A+++A   DGGL +PS+   I
Sbjct: 333 QLHHSLVLSRTTGKLLNSLDALVRKAVRGWLKLPHDTHRAFFYAHQADGGLNVPSLYHLI 392

Query: 373 P 375
           P
Sbjct: 393 P 393


>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 4/159 (2%)
 Frame = +1

Query: 13  GGKPLRQVSCVERWRYLGVDFEASGCV---TLEHSISSALNNISRAPLKPQQRLEILRAH 183
           G + +  V     ++YLG+   A+G      L   ++  L+NISRAPLKP QRL ILR H
Sbjct: 215 GSQAIPAVKASGDYKYLGILIGANGAKQRSALADVLNQGLSNISRAPLKPFQRLTILREH 274

Query: 184 LIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 363
            IP+F H  V   +    LR  D  IR AV  WL++P D   A+++A + DGGL IP + 
Sbjct: 275 FIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSWLKVPKDTINAFFYARIADGGLGIPLLT 334

Query: 364 ATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKL-RWA 477
           + IP L   RF  + ++  ++++A +     R  L +W+
Sbjct: 335 SKIPLLKKSRFENVFNACDAISKALSVDLYFRSNLEKWS 373


>SB_50245| Best HMM Match : RVT_1 (HMM E-Value=1.4e-16)
          Length = 311

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
 Frame = +1

Query: 16  GKPLRQVSCVERWRYLGVDFEASGCVTLEHS-ISSALNNISRAPLKPQQRLEILRAHLIP 192
           G  +R +   E ++YLG++  A G    E++    AL+N+SRAPLKPQQRL +L+ +L+P
Sbjct: 230 GGEIRSLVANETYKYLGINIGAQGVKAAEYNAFKEALDNLSRAPLKPQQRLFMLKTYLLP 289

Query: 193 RFQHGFVFGNISDDRLRMLD 252
           +  H  V    +   L  LD
Sbjct: 290 QLHHSLVLSRTTGKLLNSLD 309


>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 13  GGKPLRQVSCVERWRYLGVDFEASGCVTLEHSI-SSALNNISRAPLKPQQRL 165
           GGK +R ++  E  +YL +   A G    E+ +   AL N+SRA LKPQQRL
Sbjct: 27  GGK-IRSLAANETNKYLSISIGAQGAKAAEYKVLKEALYNLSRARLKPQQRL 77


>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 442 KSDKIRKKLRWAWKQLRRFSRRHKDPTAGTEGGARQN 552
           K  +I K+LRW +KQ  R S+R K+ TA  +     N
Sbjct: 207 KDQEILKELRWHYKQYIRASKRKKEKTADKKQSFESN 243


>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
          Length = 1216

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
 Frame = +1

Query: 196 FQHGFVFGNISDDRLRMLD-VQ------IRKAVGQWLRLPADVPKAYYHAAVQDGGLAIP 354
           FQ  +V+ N++D RL+++D +Q        KA  +  R    +PK Y ++ + DG L + 
Sbjct: 546 FQDMYVYTNVADARLQVIDKIQDTNAEVCLKAEPKTKRESPSIPKQYVYSNLSDGNLVLG 605

Query: 355 S 357
           S
Sbjct: 606 S 606


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -3

Query: 831 PXXXXXPXHPPIRGGAPPDRDPPTFG 754
           P     P  PPI GGAPP   PP FG
Sbjct: 684 PGGAAPPPPPPIGGGAPPP-PPPGFG 708


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 27/66 (40%), Positives = 35/66 (53%)
 Frame = -1

Query: 233  SSEMFPNTKPCWNLGIR*ALKISNLCWGLRGALEMLFRALLILCSNVTHPEASKSTPRYR 54
            S  M P T+   N+G +  LKISNL  G+R    ML +AL  +  +  H E  +ST  YR
Sbjct: 1353 SRVMDPTTRA--NIGKQRKLKISNLVKGVR----MLLKALKKI--SPEHNE-GESTSEYR 1403

Query: 53   HRSTQL 36
             R  QL
Sbjct: 1404 TRDAQL 1409


>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
          Length = 617

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 801 PIRGGAPPDRDPPTFGSSRXKEPAVAISRGP 709
           P RGG  P R   T G+++   PA A + GP
Sbjct: 387 PARGGPSPARGVATRGAAKTASPAAAKTSGP 417


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 837 GXPXXXXXPXHPPIRGGAPPDRDPPTFGSSRXKEPAVAISRGP 709
           G P     P  P   GGAPP   PP FG+     P  A++ GP
Sbjct: 193 GMPPPPPPPPPPGFPGGAPPP-PPPPFGA----PPPPALNGGP 230


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 831 PXXXXXPXHPPIRGGAPPDRDPPTFGSSR 745
           P     P  PP+    PP  + PTFG+SR
Sbjct: 160 PSQGSFPPPPPMGKPPPPSGNKPTFGNSR 188


>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -1

Query: 785 RHLIGTPRRLEAAGSKSRPSPSVEGPTSQSERGSSTDHPVRGRG 654
           + + G    +E A  K   +P   G      RG    HP+RGRG
Sbjct: 45  KEIFGRALNIEYAQEKESSAPRRGGYGGGPPRGPPRGHPMRGRG 88


>SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)
          Length = 276

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 540 RSTKPRPCCFTGRDERRLWVP 602
           RS +P P  F G DERRLW P
Sbjct: 56  RSEQPTP--FVGSDERRLWHP 74


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 831 PXXXXXPXHPPIRGGAPPDRDPPTFGSSR 745
           P     P  PP+    PP  + PTFG+SR
Sbjct: 72  PSQGSFPPPPPMGKPPPPSGNKPTFGNSR 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,971,648
Number of Sequences: 59808
Number of extensions: 632569
Number of successful extensions: 2474
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2469
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)