Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A08
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    33   0.32 
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911...    31   0.74 
At1g28280.1 68414.m03471 VQ motif-containing protein contains PF...    29   3.0  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    29   5.2  

>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
           domain PF04931: DNA polymerase V
          Length = 1306

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +1

Query: 226 SDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGL 405
           + D+ R L+  ++K  G     P  +P A    + +    ++PS  A+   L +  F  L
Sbjct: 71  ASDKQRRLEAALKKNNGVGASRPKPIPVAVNSNSDEADDESLPSAAASSSSLPLNYFTDL 130

Query: 406 DSSPWSVARAAAKSDKIR 459
            SS  SV  AAA+S  +R
Sbjct: 131 ASSDASVREAAAESLVLR 148


>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
           Plant protein of unknown function (DUF869)
          Length = 982

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
 Frame = -2

Query: 364 LAPMGSLSRRPELRRDNMPWAHPPVALATVRLLS------------GFGHRAFSIGHPRC 221
           ++PM  +S+  E   DNM   H    L T RLL+               +    +    C
Sbjct: 330 MSPMSHMSQVSEFSLDNMQKFHKENDLLTERLLAMEEETKMLKEALAKRNSELQVSRNLC 389

Query: 220 FQTQNRAGISESDELSKSPTSVGV*EVPLRCYS 122
            +T NR    E+  +SKSPT  G  E+P   +S
Sbjct: 390 AKTANRLQTLEAQMMSKSPTKRGF-EMPAEIFS 421


>At1g28280.1 68414.m03471 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 247

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 238 IGHPRCFQTQNRAGISESDELSKSPTS 158
           I  PRC  + N  G+S S E +K PT+
Sbjct: 14  IPSPRCHNSNNSCGMSSSSESNKPPTT 40


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 742  QRAGRRHQSRAQLRKVSAEVPPTIQFEAEVP-KTGHPDPDADASDHEVGTQRRRSSRPVK 566
            + A +  + +A +   S  + P + F    P + GH +P A       GT+  R SR ++
Sbjct: 1219 ETAEQIRRQQALVNSASRRMSPQVSFTGAPPLENGHQEPLAPIPSRRFGTESFRRSR-IE 1277

Query: 565  QQGLGFVE 542
            +Q   FV+
Sbjct: 1278 RQPHEFVD 1285


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,079,190
Number of Sequences: 28952
Number of extensions: 452685
Number of successful extensions: 1492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1490
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)