Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A07
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81042-7|CAE46660.1|  371|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z73976-9|CAA98280.2|  371|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical p...    28   9.8  

>Z81042-7|CAE46660.1|  371|Caenorhabditis elegans Hypothetical
           protein T07C12.11 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 8   DDYDLSH*RRWHDDPGDENSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRG 187
           DD+ L+       +P   N   P H ++D    I ++ ++ I Y  +P   ER W++ R 
Sbjct: 16  DDFTLALIDSVQRNPCVYNRYDPLHKVTDYKHEIWKLISIEIGYDGQPVELERKWKHMRD 75

Query: 188 K 190
           K
Sbjct: 76  K 76


>Z73976-9|CAA98280.2|  371|Caenorhabditis elegans Hypothetical
           protein T07C12.11 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 8   DDYDLSH*RRWHDDPGDENSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRG 187
           DD+ L+       +P   N   P H ++D    I ++ ++ I Y  +P   ER W++ R 
Sbjct: 16  DDFTLALIDSVQRNPCVYNRYDPLHKVTDYKHEIWKLISIEIGYDGQPVELERKWKHMRD 75

Query: 188 K 190
           K
Sbjct: 76  K 76


>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -2

Query: 379 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 245
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>Z95559-10|CAB63364.2|  327|Caenorhabditis elegans Hypothetical
           protein Y41E3.15 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -2

Query: 661 FYGTSWLKPLYXKGXDXPWLSQSLCVLNIWIKPXFALLLHARFLSSL 521
           FY  SW    +  G   P+L  S+ +  ++I+  +  +++  F + L
Sbjct: 17  FYNCSWKSEWFETGVKRPFLGYSIMIFGVFIEFLYPPIIYLIFKTKL 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,371,752
Number of Sequences: 27780
Number of extensions: 354899
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)