Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A06
(936 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 46 3e-05
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 45 8e-05
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 44 2e-04
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 43 3e-04
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.001
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 42 0.001
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 40 0.004
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 39 0.005
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 38 0.012
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 38 0.012
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 38 0.015
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 38 0.015
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.062
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.25
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 33 0.33
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 32 0.58
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 32 0.77
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 32 0.77
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.77
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 1.3
SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 30 2.3
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 29 5.4
SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043) 29 5.4
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 29 5.4
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1) 29 7.1
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06) 28 9.4
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 46.4 bits (105), Expect = 3e-05
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Frame = +1
Query: 319 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 483
++ LL Y +++ P + + + L + LR ++ E + + I ++ W D L
Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94
Query: 484 WNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNN------GSVSWI 636
WN ++G + ++ +R+W+PDV+L N A+T +L ++ N GS +W+
Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRASTDLRFGSLNNKIDTNVIVNHDGSTTWL 152
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +1
Query: 319 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 483
+++ L Y +++ P D + + L + LR ++ E E + ++ W D L
Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512
Query: 484 WNAGEW-GCSTWLVSSERLWRPDVVLLN 564
WN ++ G + +++ +++W+PDV+L N
Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 45.2 bits (102), Expect = 8e-05
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Frame = +1
Query: 385 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL 561
LTL+ H ++E ++ L+ W D RL+WN E+ G + S+ +W PD+ +L
Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80
Query: 562 NAAATTAG--DYALRARVSNNGSVSWIKRLDIST 657
N+A + +R +++ G V W+ L + T
Sbjct: 81 NSANKDMDLREKNIRLFINSAGEVLWMNPLILHT 114
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +1
Query: 331 LLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 495
L TY+++ P D + V L L L ++ + T+ ++ ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 496 EW-GCSTWLVSSERLWRPDVVLLNAA 570
+ G ++ + RLW PD+ L N A
Sbjct: 80 AYDGVDNIVIKASRLWLPDITLYNNA 105
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +1
Query: 457 MNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 570
+ W++ LSWNA E+G +T V +RLW PD+VL N A
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYNNA 115
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 41.5 bits (93), Expect = 0.001
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +1
Query: 403 HANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NAAAT 576
H + + TV L W D L+WN ++ G + V +W PD+VL N +
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYNNVDSD 258
Query: 577 TAGD---YALRARVSNNGSVSWIKRLDIST 657
++G+ + + + ++G+V W+ + + +
Sbjct: 259 SSGEMYKFTTKVNIHSDGTVQWLSPIQVKS 288
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 41.5 bits (93), Expect = 0.001
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +1
Query: 463 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGD--YALRA--RVSNNGSV 627
W + LSWNA E+G S + ++LW+PD+ L N A ++A Y +A +VS+ G
Sbjct: 119 WKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGSLYGFKAKIKVSHTGLN 178
Query: 628 SWIKRLDIST 657
W+ ++T
Sbjct: 179 MWLAPTILTT 188
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +1
Query: 430 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLNAAATTAGDYALR- 600
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN A ++ +
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLNNAEKSSMGKPVNE 91
Query: 601 ---ARVSNNGSVSWI 636
V +NG V W+
Sbjct: 92 GNPVLVESNGVVRWL 106
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 436 RILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 567
+++ + + W + LSWNA E+ G S VS +R W PD++L N+
Sbjct: 16 KLIRIIAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNS 60
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 39.1 bits (87), Expect = 0.005
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Frame = +1
Query: 451 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARV------ 609
+++ W D L+WN ++G + V +W+PD++L N A+T +L ++
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPASTDLRVESLYKKIDTKVIL 85
Query: 610 SNNGSVSWIKRLDIST 657
S++GS +W+ I T
Sbjct: 86 SSDGSAAWLSPAIIKT 101
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 37.9 bits (84), Expect = 0.012
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 430 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 564
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +1
Query: 394 HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NA 567
HLR + V + ++ W + L+WN ++ G + ++ ++W PD++L NA
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165
Query: 568 AATTAG---DYALRARVSNNGSVSW 633
T AG Y S++G+ W
Sbjct: 166 DETYAGGLEKYKTSVIASSDGTQEW 190
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 37.5 bits (83), Expect = 0.015
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +1
Query: 295 ENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQM 459
++ L L+ D Y++ P D + V + + + + + ++L ++M
Sbjct: 27 QDDNELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGIAYTQVVDLIEKDQVLISNIWVRM 86
Query: 460 NWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 564
NW + L WNA E+G L +S +W PD+VL N
Sbjct: 87 NWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 37.5 bits (83), Expect = 0.015
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +1
Query: 451 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATT---AGDYALRARVSNN 618
+ + W D RL WN ++G +++ S +LW PD+ L N A + V+++
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYNNANDNYEKEKEEYYGLTVNSD 335
Query: 619 GSVSW 633
GS+ W
Sbjct: 336 GSIGW 340
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 35.9 bits (79), Expect = 0.047
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 451 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAA----TTAGDYALRARVSN 615
L+M W D L WN ++G T + + + +W P V++ N A + R V +
Sbjct: 547 LRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYNQAGDLGESITSSNTPRPVVRS 606
Query: 616 NGSVSWI 636
+G+V W+
Sbjct: 607 DGTVLWM 613
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 35.5 bits (78), Expect = 0.062
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +1
Query: 451 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN--AAATTAGDYAL--RARVSN 615
+ + W++ L+W+ +G T + V+ +W+PD+VL + T Y RA + +
Sbjct: 64 INLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVLYHNIGFGETGAIYKFDTRATIMH 123
Query: 616 NGSVSWIKRLDI 651
NG W +I
Sbjct: 124 NGYTEWFAPTEI 135
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 33.5 bits (73), Expect = 0.25
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +1
Query: 433 VRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTAG----DYAL 597
+ I+ + + W ++ L+W+ + G T + ++ +W PD+VL ++A + Y
Sbjct: 39 MEIVQIVNVRWDNELLTWHPSNYEGVQTVRLDAKSVWIPDIVLYDSADSVFSGGHEKYKT 98
Query: 598 RARVSNNGSVSW 633
+S +GS +W
Sbjct: 99 HVIISKDGSSAW 110
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 33.1 bits (72), Expect = 0.33
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +1
Query: 463 WIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAG---DYALRARVSNNGSV 627
W + L WN +G + VS ++W PD+VL NA A+T G ++ R VS++G
Sbjct: 40 WYNPFLRWNETFYGGIKEINVSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVSSDGKN 99
Query: 628 SWI 636
W+
Sbjct: 100 MWL 102
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 32.3 bits (70), Expect = 0.58
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +1
Query: 451 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAAT----TAGDYALRARVSN 615
+ + W + ++WN E+G + + LW+PD+ L N A + + + + +V+
Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYNNADSGYDGSLYGFTAKIKVNY 103
Query: 616 NGSVSWI 636
+G+ +W+
Sbjct: 104 SGTNTWL 110
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 31.9 bits (69), Expect = 0.77
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Frame = +1
Query: 250 LSAQFVLAIASAAECENATSL---SLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRE 420
+SA+F +A+ + + SL S + + L T SPP ++ + L ++
Sbjct: 22 VSAKFGIALKEVLDMDAIPSLIHPSYDVITSLCTLTMTSPPP--LLASSRLAFPGYDVIS 79
Query: 421 SESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 564
+ V + + W D L W+ + G T + V LW+PD+VL N
Sbjct: 80 GPNMVLLC---RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYN 125
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 31.9 bits (69), Expect = 0.77
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 370 KIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRP 546
K +V LH + A + S S VR+ +++ W + L WN ++G T V+ +W P
Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126
Query: 547 DVVLLN 564
D+VL N
Sbjct: 127 DIVLYN 132
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 31.9 bits (69), Expect = 0.77
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 451 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 570
+ + W + L+W+ +G T + V R+WRPD++L N A
Sbjct: 75 IDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYNNA 115
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 31.1 bits (67), Expect = 1.3
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +1
Query: 319 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 492
+++ LL YDR P + V +TL L T+ + D+ W + L+WN
Sbjct: 15 LLEKLLTGYDRNERPVLNDNESVTVTLGL----------TLNQIVDVI--WYNPLLTWNV 62
Query: 493 GEWG-CSTWLVSSERLWRPDVVL 558
E+G T VS +W PD+VL
Sbjct: 63 TEYGGLKTINVSPTIIWLPDIVL 85
>SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8)
Length = 156
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 463 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 564
W ++ L+W+ E+G ST V+ +++W PD+ L N
Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYLYN 36
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 29.9 bits (64), Expect = 3.1
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Frame = +1
Query: 463 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN---AAATTAGDYAL---RARVSNNGS 624
W D L W+ ++ S + +W PDV L+N AG L V +G
Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLINNGDKLVHVAGGAELFNADTVVRQSGK 463
Query: 625 VSWIKRLDIST 657
V WI + ++
Sbjct: 464 VDWIAQASFTS 474
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 29.1 bits (62), Expect = 5.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 511 TWLVSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNG 621
TWL+ +WRPD+VL +A D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 29.1 bits (62), Expect = 5.4
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +1
Query: 343 YDRESPP--DSKIVVNLTLHLRHAN---IRESESTVRILADLQMNWIDKRLSWNAGEWGC 507
YD+ P D+ V L + + N I E V + ++ NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 508 STWLVSSERLWRPDVVLLNAAA 573
+ E++WRPD NA A
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94
>SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043)
Length = 137
Score = 29.1 bits (62), Expect = 5.4
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +1
Query: 343 YDRESPP--DSKIVVNLTLHLRHAN---IRESESTVRILADLQMNWIDKRLSWNAGEWGC 507
YD+ P D+ V L + + N I E V + ++ NW D RL+ N +
Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72
Query: 508 STWLVSSERLWRPDVVLLNAAA 573
+ E++WRPD NA A
Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 29.1 bits (62), Expect = 5.4
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +1
Query: 451 LQMNWIDKRLSWNAG-EWGCSTWLVSSERLWRPDVVLLN 564
+ W D L WN G V +W PD+ L+N
Sbjct: 28 IYQEWKDPNLKWNKSIAQGVEEIFVDPSDIWTPDIALMN 66
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 29.1 bits (62), Expect = 5.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 420 LTNVSMSQMQGQVDYDFGVGGRLPIVRCEERVDHE 316
L+++S +G VD FGV + +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
Length = 570
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 179 VFIQYFRNHTMYLLHERILCIRLCYQ 256
V +QY RNH YLLH+ C+ L Y+
Sbjct: 244 VALQY-RNHCHYLLHKLCYCVALQYR 268
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 442 LADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 564
+ DLQ W + L+W+ ++G + V+ E +W PD+V+ N
Sbjct: 1467 IVDLQ--WENPILTWDPRDYGGVQEINVAPEEVWVPDIVIYN 1506
>SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06)
Length = 229
Score = 28.3 bits (60), Expect = 9.4
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Frame = +1
Query: 298 NATSLSLMIDSLLATYDRESPPD-SKIVVNLTLHLRHANIRE-SESTVRILAD--LQMNW 465
NA +LS+ I+ LA+YDR+ P+ + V + + + + E E+ + D L+ W
Sbjct: 15 NAHNLSVFINDALASYDRKVRPNYGGLPVMVLIEFKVISFGEIQEANMEYSFDIFLRQWW 74
Query: 466 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 564
D R N E + ++ W PD N
Sbjct: 75 YDPRFKSNFTE-PFTMAADPTKMFWTPDTYFWN 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,828,029
Number of Sequences: 59808
Number of extensions: 576951
Number of successful extensions: 1447
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2729039029
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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