Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A05
         (1235 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0866 - 22134215-22135351                                         25   6.7  

>07_03_0866 - 22134215-22135351
          Length = 378

 Score = 25.4 bits (53), Expect(2) = 6.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 44  GGGGGXAGGXNXXXMXXMGG 103
           GGGGG  GG +   M   GG
Sbjct: 38  GGGGGGGGGAHVRLMCSFGG 57



 Score = 22.2 bits (45), Expect(2) = 6.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 35 NXXGGGGGXAGG 70
          N  GGGGG  GG
Sbjct: 32 NGHGGGGGGGGG 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,679,009
Number of Sequences: 37544
Number of extensions: 56689
Number of successful extensions: 1994
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3806166204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)