Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A02
(851 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 33 0.24
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ... 33 0.32
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 32 0.56
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr... 32 0.56
At4g25910.1 68417.m03725 nitrogen fixation protein, putative nit... 31 1.3
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 30 2.2
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 29 3.0
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 29 3.9
At5g46640.1 68418.m05744 DNA-binding family protein contains a A... 29 5.2
At3g24550.1 68416.m03083 protein kinase family protein contains ... 28 6.9
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 28 6.9
At5g20950.2 68418.m02490 glycosyl hydrolase family 3 protein bet... 28 9.1
At5g20950.1 68418.m02489 glycosyl hydrolase family 3 protein bet... 28 9.1
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 28 9.1
At2g27390.1 68415.m03306 proline-rich family protein contains pr... 28 9.1
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 28 9.1
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 483 PFILSHYYWRSRPYASSHPPLAISATSTRSSNPRIPYTNHPRLNI 617
P SHY Y+S H A S+TS S+ P PY+++ R+NI
Sbjct: 308 PHYPSHYQNPEPYYSSPHSAPAPSSTSFSSAPPPPPYSSNGRINI 352
>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
glutamine phosphoribosylpyrophosphate amidotransferase,
putative / phosphoribosyldiphosphate 5-amidotransferase,
putative similar to amidophosphoribosyltransferase
[Arabidopsis thaliana] GI:469195; contains Pfam profiles
PF00156: Phosphoribosyl transferase domain, PF00310:
Glutamine amidotransferases class-II
Length = 532
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +1
Query: 472 VLATPSSSRITIGGLALMHQATLPWRSRLHQPDHQIPEFHTPTTP--DLT-SISINPLNA 642
V+A P S T+ L +A +P++ L + + F PT D + ++P+ A
Sbjct: 354 VIAVPDSG--TVAALGYAAKAGVPFQIGLLRSHYAKRTFIEPTQEIRDFAVKVKLSPVRA 411
Query: 643 VLEGVRAGVKASVVIRGSISV 705
VLEG R V ++RG+ S+
Sbjct: 412 VLEGKRVVVVDDSIVRGTTSL 432
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 31.9 bits (69), Expect = 0.56
Identities = 21/66 (31%), Positives = 26/66 (39%)
Frame = +2
Query: 527 IKPPSPGDLGYINPIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAPSAY 706
+KPP+ P K P S +PP T P PS P P+ K PP + P
Sbjct: 117 VKPPTKPPPSTPKPPTKPPPSTPKPPTT-KPPPSTPKPPHHKPPPTPCPPPTPTPTPPVV 175
Query: 707 LTPLVT 724
P T
Sbjct: 176 TPPTPT 181
>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 31.9 bits (69), Expect = 0.56
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 514 LALMHQATL--PWRSRLHQPDHQIPEFHTPTTPDLTSISINPLNAVLEGVRAGV 669
LAL+ TL PW + P H++PEFH+P + NP LEGV +
Sbjct: 92 LALLSLQTLEKPWELENYLP-HEVPEFHSPIHSETNHYYHNP---SLEGVNEAI 141
>At4g25910.1 68417.m03725 nitrogen fixation protein, putative
nitrogen fixation protein nifU (SP:Q43885) [Anabaena
sp.]; contains Pfam profile: PF01106 NifU-like domain
Length = 236
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +1
Query: 604 PDLTSISINPLNAVLEGVRAGVKASVVIRGSISVSHPPRHWAWLKEFRPLISK*MMNHKL 783
P+ S +N NA+ + + K S +RG H ++WL+ RPL + + H
Sbjct: 24 PNFRSSLLNSKNAISDTLGVSSKCSTFLRGQFQRIH----FSWLQHTRPLRKRTVFGHVS 79
Query: 784 RALLVVIPRILRSLPPITP 840
+ + + R L + P
Sbjct: 80 CVMPLTEENVERVLDEVRP 98
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 533 PPSPGDLGYINPIIKSP---NSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAP 697
PP P + Y P+ KSP + ++ PP T P P Y +P PP ++P
Sbjct: 718 PPPPSPV-YYPPVAKSPPPPSPVYYPPVTQSPPPPSTPVEYHPPASPNQSPPPEYQSP 774
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 566 PIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAPSAYLTPLVTGHG 733
P++ P + PP T P P P PGL PP+++ P L P+ T G
Sbjct: 109 PVVYPPPIVRPPPITRPPIIIPPIQPPPVTTPPGLLPPITT--PPGLLPPVTTPPG 162
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +2
Query: 533 PPSPGDLGY--INPIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAPSAY 706
PP P L Y + P P+ ++ PP T P P P Y P PP PS
Sbjct: 612 PPPPSPLYYPPVTPSPPPPSPVYYPPVT--PSPPPPSPVYYPPVTPSPPPPSPVYYPSET 669
Query: 707 LTP 715
+P
Sbjct: 670 QSP 672
>At5g46640.1 68418.m05744 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 386
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 489 ILSHYYWRSRPYASSHPPLAISATSTRSSNPRIPYTNHPRLNIHFHQSPE 638
++SHY P A++ P + ++TS +PR+P+ N + FHQ +
Sbjct: 20 LMSHY---RNPNAAASPLMVPTSTSQPIQHPRLPFGNQQQSQT-FHQQQQ 65
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 536 PSPGDLGYINPIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPG-LKPPLSSEAPSAYLT 712
P P P S NS PP + P PS+P PG L PPL +PSA +T
Sbjct: 34 PPPTTTPSSPPPSPSTNSTSPPPSSPLP-PSLP-----PPSPPGSLTPPLPQPSPSAPIT 87
Query: 713 P 715
P
Sbjct: 88 P 88
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +2
Query: 530 KPPSPGDLGYINPIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPG--LKPPLSSEAPSA 703
KPP+ Y PI K P + PP P P Y P KPP + +P
Sbjct: 74 KPPTYSPPIYPPPIQKPPTPTYSPPIYPPPIQKPPTPTYSPPIYPPPIQKPPTPTYSPPI 133
Query: 704 YLTPL 718
Y P+
Sbjct: 134 YPPPI 138
>At5g20950.2 68418.m02490 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
EMBL:AB017502
Length = 624
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -3
Query: 759 GNKGAKLL*PCPVTRGVRYADGASDDNGGFNPGANSF*YGVQGIDGN 619
G GAK L P P G GA DN G+ G + + QG++GN
Sbjct: 415 GKTGAKPLLPLPKKSGKILVAGAHADNLGYQCGGWTITW--QGLNGN 459
>At5g20950.1 68418.m02489 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
EMBL:AB017502
Length = 624
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -3
Query: 759 GNKGAKLL*PCPVTRGVRYADGASDDNGGFNPGANSF*YGVQGIDGN 619
G GAK L P P G GA DN G+ G + + QG++GN
Sbjct: 415 GKTGAKPLLPLPKKSGKILVAGAHADNLGYQCGGWTITW--QGLNGN 459
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 313 QSLPNVSSIIKGYRDAY 363
QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870
>At2g27390.1 68415.m03306 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +2
Query: 524 CIKPPSPGDLGYINPIIKSPNSIHQPPQT*HPFPSI--P*TPY*KEFAPGLKPPLSSEAP 697
C PP L ++P P S PP+ PFP++ P P F L PPL P
Sbjct: 27 CCPPPLVFPLLPLSPPPSPPPSPSSPPRLPPPFPALFPPEPPLPPRFE--LPPPLFPPPP 84
Query: 698 SAYLTP 715
L P
Sbjct: 85 LPRLPP 90
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +2
Query: 533 PPSPGDLGYI-NPIIKS--PNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAPSA 703
PP P GY+ +P + PN HQP H P PY ++ PG +P S A SA
Sbjct: 393 PPPP--YGYMPSPYQQQYPPNHHHQPSPMQHYAPPPAAYPYPQQPGPGSRPAPSPTAVSA 450
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,271,840
Number of Sequences: 28952
Number of extensions: 407456
Number of successful extensions: 1142
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -