Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A01
         (1053 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.56 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.56 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.56 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.56 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.56 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.0  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   9.0  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    22   9.0  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    22   9.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   9.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   9.0  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PDV+   +A
Sbjct: 67  WNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PDV+   +A
Sbjct: 67  WNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PDV+   +A
Sbjct: 67  WNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PDV+   +A
Sbjct: 67  WNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PDV+   +A
Sbjct: 67  WNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 517 EXSTPPVV-AAAXSXTTSGLXQAFXRTPAQVLQPHSPAFQTQSXVDPIHL 371
           E S PP   +AA   ++SG+       P       SPA    +   P+H+
Sbjct: 8   EESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHI 57


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = -3

Query: 700 HXXPXPVPPXPXTQXPRTLNVQVXMXPWXXXVRXPSKLGV 581
           H  P        T   +TLNV   +  W      PSK+ +
Sbjct: 220 HYAPLYASHLDQTDEQKTLNVAAGIQYWLDEGAPPSKINL 259


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = -3

Query: 700 HXXPXPVPPXPXTQXPRTLNVQVXMXPWXXXVRXPSKLGV 581
           H  P        T   +TLNV   +  W      PSK+ +
Sbjct: 221 HYAPLYASHLDQTDEQKTLNVAAGIQYWLDEGAPPSKINL 260


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = -3

Query: 700 HXXPXPVPPXPXTQXPRTLNVQVXMXPWXXXVRXPSKLGV 581
           H  P        T   +TLNV   +  W      PSK+ +
Sbjct: 221 HYAPLYASHLDQTDEQKTLNVAAGIQYWLDEGAPPSKINL 260


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 535 IPPGPGEXSTPPVVAAAXSXTTSGLXQ 455
           IPP PG    PP +++  +  T G  Q
Sbjct: 230 IPPHPGLSPHPPHLSSHPAIVTPGPKQ 256


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 535 IPPGPGEXSTPPVVAAAXSXTTSGLXQ 455
           IPP PG    PP +++  +  T G  Q
Sbjct: 122 IPPHPGLSPHPPHLSSHPAIVTPGPKQ 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,552
Number of Sequences: 336
Number of extensions: 2909
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 30104324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)