Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A01
(1053 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53) 30 3.6
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28) 30 3.6
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.6
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 29 4.7
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 6.3
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.3
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 29 8.3
SB_43066| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.3
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.3
SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01) 29 8.3
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 8.3
>SB_47282| Best HMM Match : RCSD (HMM E-Value=0.53)
Length = 264
Score = 29.9 bits (64), Expect = 3.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P+ P PPP PPPPP
Sbjct: 75 PLCAPPPPPPPPPPPPPP 92
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 74 PPLCAPPPPPPPPPPPPP 91
>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
Length = 465
Score = 29.9 bits (64), Expect = 3.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P+ P PPP PPPPP
Sbjct: 276 PLCAPPPPPPPPPPPPPP 293
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 275 PPLCAPPPPPPPPPPPPP 292
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.9 bits (64), Expect = 3.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P+ P PPP PPPPP
Sbjct: 911 PLPLAPEPPPPLPPPPPP 928
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 29.5 bits (63), Expect = 4.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 97 PACCAPPPPPPPPPPPPP 114
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 102 PPPPPPPPPPPPPPPPPP 119
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 103 PPPPPPPPPPPPPPPPPP 120
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 29.5 bits (63), Expect = 4.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 70 KXFLXPVXXXPXXPPPXXPPPPP 2
K + P P PPP PPPPP
Sbjct: 1302 KEQIQPPESPPPPPPPPPPPPPP 1324
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 1308 PESPPPPPPPPPPPPPPP 1325
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.1 bits (62), Expect = 6.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 61 LXPVXXXPXXPPPXXPPPPP 2
+ P P PPP PPPPP
Sbjct: 681 MVPPPPPPPPPPPPPPPPPP 700
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 684 PPPPPPPPPPPPPPPPPP 701
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 29.1 bits (62), Expect = 6.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 61 LXPVXXXPXXPPPXXPPPPP 2
+ P P PPP PPPPP
Sbjct: 363 MSPPPPPPPPPPPPSPPPPP 382
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 366 PPPPPPPPPPPSPPPPPP 383
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 370 PPPPPPPSPPPPPPPPPP 387
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 376 PSPPPPPPPPPPSPPPPP 393
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 382 PPPPPPSPPPPPQPPPPP 399
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 387 PSPPPPPQPPPPPPPPPP 404
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 390 PPPPQPPPPPPPPPPPPP 407
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 391 PPPQPPPPPPPPPPPPPP 408
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 392 PPQPPPPPPPPPPPPPPP 409
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 393 PQPPPPPPPPPPPPPPPP 410
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 395 PPPPPPPPPPPPPPPPPP 412
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 396 PPPPPPPPPPPPPPPPPP 413
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 397 PPPPPPPPPPPPPPPPPP 414
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 398 PPPPPPPPPPPPPPPPPP 415
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 399 PPPPPPPPPPPPPPPPPP 416
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 400 PPPPPPPPPPPPPPPPPP 417
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 401 PPPPPPPPPPPPPPPPPP 418
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 407 PPPPPPPPPPPPAPPPPP 424
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 408 PPPPPPPPPPPAPPPPPP 425
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 412 PPPPPPPAPPPPPPPPPP 429
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 413 PPPPPPAPPPPPPPPPPP 430
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 415 PPPPAPPPPPPPPPPPPP 432
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 867 PPPPPPPPPPPPPPPPPP 884
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 868 PPPPPPPPPPPPPPPPPP 885
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 464 PPPPPPPPPPPPPPPPPP 481
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 465 PPPPPPPPPPPPPPPPPP 482
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 466 PPPPPPPPPPPPPPPPPP 483
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 467 PPPPPPPPPPPPPPPPPP 484
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 468 PPPPPPPPPPPPPPPPPP 485
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 469 PPPPPPPPPPPPPPPPPP 486
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 470 PPPPPPPPPPPPPPPPPP 487
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 476 PPPPPPPPPPPPFPPPPP 493
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 477 PPPPPPPPPPPFPPPPPP 494
>SB_43066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 54 PPPPPPPPPPPPPPPPPP 71
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 1166 PPPSSPSPPPPPPPPPPP 1183
>SB_9194| Best HMM Match : SWIM (HMM E-Value=0.01)
Length = 701
Score = 28.7 bits (61), Expect = 8.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 192 AAECENATSLSRHDRLAPRQXTIGSLPPHCKIVGQPDP 305
+A+C+N ++ + PRQ T+ S C++V P P
Sbjct: 514 SADCKNTERVTLYRARVPRQKTLISEKRKCRLVLMPSP 551
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 190 PPSGGPPPPPPPPPPPPP 207
Score = 28.7 bits (61), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 191 PSGGPPPPPPPPPPPPPP 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,483,260
Number of Sequences: 59808
Number of extensions: 428128
Number of successful extensions: 2885
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3165923931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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