Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_A01
         (1053 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.86 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.86 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.86 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.86 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.86 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.86 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.86 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.86 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   1.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   2.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   6.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.0  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.86
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PD++   +A
Sbjct: 50  WNESEYGGVKDLRITPNKLWKPDILMYNSA 79


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.86
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PD++   +A
Sbjct: 50  WNESEYGGVKDLRITPNKLWKPDILMYNSA 79


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.86
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PD++   +A
Sbjct: 50  WNESEYGGVKDLRITPNKLWKPDILMYNSA 79


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.86
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PD++   +A
Sbjct: 50  WNESEYGGVKDLRITPNKLWKPDILMYNSA 79


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.86
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PD++   +A
Sbjct: 50  WNESEYGGVKDLRITPNKLWKPDILMYNSA 79


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.86
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PD++   +A
Sbjct: 50  WNESEYGGVKDLRITPNKLWKPDILMYNSA 79


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.86
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PD++   +A
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSA 147


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.86
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  E+G      +  N  W+PD++   +A
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSA 147


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVV 476
           WNA E+       V  N  WRPD +
Sbjct: 69  WNASEFAGIRVIRVPYNRVWRPDTI 93


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 473 HVRPPXSVXEDTSPSAAAP-FPCVPNSVXCRSNSFEDXPS 357
           +VRP  +V  + + S  A    CV NSV C   S E  PS
Sbjct: 239 NVRPRRNVLIERAKSIRARRTECVTNSVTCDRPSDEAEPS 278


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 216 SLSRHDRLAPRQXTIGSLPPHCKIVGQP 299
           SL   D L PR+    +L   C+I G P
Sbjct: 421 SLDSRDELHPRELEAVNLGSACRIHGSP 448



 Score = 22.6 bits (46), Expect = 6.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVV 476
           W+  E+G      V  +  WRPD+V
Sbjct: 88  WDPKEYGGVEMLHVPSDHIWRPDIV 112


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 399 VWNAGEWGCSTWAGV 443
           VW    WG  TW G+
Sbjct: 552 VWRFQPWGPFTWGGI 566


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 31  PPPXXPPPPP 2
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 6.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 31  PPPXXPPPPP 2
           P P  PPPPP
Sbjct: 339 PKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 434 PSAAAPFPCVPN 399
           PSA AP P +PN
Sbjct: 411 PSAGAPMPPIPN 422


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVV 476
           W   E+G      V  +  WRPD+V
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIV 116


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVV 476
           W   E+G      V  +  WRPD+V
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIV 116


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +3

Query: 402 WNAGEWGCSTWAGVLXNAXWRPDVVXLXAA 491
           WN  ++G      +  +  W+PDV+   +A
Sbjct: 87  WNVSDYGGVRDLRIPPHRLWKPDVLMYNSA 116


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 202 AKTQHHCPVMIDSLLV 249
           AK  HH P   D+LLV
Sbjct: 792 AKAMHHYPTREDNLLV 807


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,430
Number of Sequences: 438
Number of extensions: 4200
Number of successful extensions: 28
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35065791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)