Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_A01
(1053 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 0.32
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family... 26 0.33
At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family... 26 0.37
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family... 26 0.57
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 26 0.60
At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family... 31 1.3
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 27 1.6
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family... 26 2.7
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 30 2.9
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 3.9
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 3.9
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 26 4.2
At1g70990.1 68414.m08190 proline-rich family protein 25 5.0
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family... 29 5.1
At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family pr... 29 5.1
At4g33660.1 68417.m04781 expressed protein 29 6.8
At3g51290.1 68416.m05614 proline-rich family protein 29 6.8
At3g50180.1 68416.m05486 hypothetical protein 29 6.8
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 29 6.8
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont... 29 6.8
At2g40820.1 68415.m05038 proline-rich family protein contains pr... 29 6.8
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 26 7.5
At3g20720.1 68416.m02622 expressed protein 28 9.0
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 28 9.0
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 461 PPVYSPPPPPPPPPPPPP 478
Score = 25.8 bits (54), Expect(2) = 0.32
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPP 5
P P PPP PPPP
Sbjct: 446 PPVYSPPPPPPPPPPPP 462
Score = 25.8 bits (54), Expect(2) = 2.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPP 5
P P PPP PPPP
Sbjct: 492 PPVYSPPPPPPPPPPPP 508
Score = 25.8 bits (54), Expect(2) = 0.32
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPPPP
Sbjct: 497 PPPPPPPPPP 506
Score = 25.8 bits (54), Expect(2) = 2.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPPPP
Sbjct: 498 PPPPPPPPPP 507
Score = 22.6 bits (46), Expect(2) = 2.6
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPP 5
P P P P PPPP
Sbjct: 477 PPVYSPPPPSPPPPPPP 493
Score = 22.6 bits (46), Expect(2) = 2.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPPP
Sbjct: 546 PPPQFSPPPP 555
>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
protein Common family members: At5g26070, At5g19800,
At1g72790 [Arabidopsis thaliana]
Length = 575
Score = 25.8 bits (54), Expect(2) = 0.33
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPP 5
P P PPP PPPP
Sbjct: 244 PPQQPPATPPPPPPPPP 260
Score = 25.8 bits (54), Expect(2) = 0.33
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPPPP
Sbjct: 296 PPPSPPPPPP 305
>At1g23040.1 68414.m02878 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 144
Score = 25.8 bits (54), Expect(2) = 0.37
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPP 5
P P PPP PPPP
Sbjct: 62 PSPPPPSPPPPACPPPP 78
Score = 25.8 bits (54), Expect(2) = 0.37
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPPPP
Sbjct: 76 PPPALPPPPP 85
>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 473
Score = 25.8 bits (54), Expect(2) = 0.57
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPPPP
Sbjct: 329 PPPPPPPPPP 338
Score = 25.0 bits (52), Expect(2) = 0.57
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 40 PXXPPPXXPPPP 5
P PPP PPPP
Sbjct: 280 PSPPPPPPPPPP 291
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 25.8 bits (54), Expect(2) = 0.60
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPPPP
Sbjct: 151 PPPPPPPPPP 160
Score = 25.4 bits (53), Expect(2) = 6.4
Identities = 14/53 (26%), Positives = 16/53 (30%)
Frame = -3
Query: 790 PGTPXNGRXSLLATPXPXEXXXXXXXXXXTHXXPXPVPPXPXTQXPRTLNVQV 632
P T +G L P P H P PP P P T+ V
Sbjct: 85 PATTNSGHHQLRPPPPPPPPLSAITTTGHHHHRRSPPPPPPPPPPPPTITPPV 137
Score = 25.0 bits (52), Expect(2) = 0.60
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 40 PXXPPPXXPPPP 5
P PPP PPPP
Sbjct: 120 PPPPPPPPPPPP 131
Score = 21.8 bits (44), Expect(2) = 6.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = -3
Query: 532 PPGPGEXSTPPVVAAAXSXTTSG 464
PP P PP + + TT+G
Sbjct: 152 PPPPPPPPPPPTITPPVTTTTTG 174
>At5g19800.1 68418.m02353 hydroxyproline-rich glycoprotein family
protein similar to extensin [Catharanthus roseus]
gi|1486263|dbj|BAA13175; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 96
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
PV P PPP PPPPP
Sbjct: 41 PVYSPPISPPPPPPPPPP 58
>At1g49750.1 68414.m05579 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560
Length = 494
Score = 26.6 bits (56), Expect(2) = 1.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPP 5
P P PPP PPPP
Sbjct: 58 PADCPPPPPPPPCPPPP 74
Score = 22.6 bits (46), Expect(2) = 1.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPP P
Sbjct: 96 PPPQLPPPAP 105
>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 561
Score = 25.8 bits (54), Expect(2) = 2.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPPPP
Sbjct: 394 PPPPPPPPPP 403
Score = 22.6 bits (46), Expect(2) = 2.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPP 5
P+ P PPP PPPP
Sbjct: 360 PLVYSPPPPPP--PPPP 374
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 61 LXPVXXXPXXPPPXXPPPPP 2
L P P PPP PPPPP
Sbjct: 37 LFPQSPPPPPPPPPPPPPPP 56
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 42 PPPPPPPPPPPPPPPPPP 59
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 43 PPPPPPPPPPPPPPPPPP 60
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 44 PPPPPPPPPPPPPPPPPP 61
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 45 PPPPPPPPPPPPPPPPPP 62
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 46 PPPPPPPPPPPPPPPPPP 63
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 47 PPPPPPPPPPPPPPPPPP 64
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 528 RAPESXVPRRWLQPRXAXPRQASXKRSRGHQPKCCSPIPLRSK 400
R+P S PRR+ P PR S +R RG + SP+PLR +
Sbjct: 270 RSPSSPPPRRYRSP----PR-GSPRRIRGSPVRRRSPLPLRRR 307
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 528 RAPESXVPRRWLQPRXAXPRQASXKRSRGHQPKCCSPIPLRSK 400
R+P S PRR+ P PR S +R RG + SP+PLR +
Sbjct: 277 RSPSSPPPRRYRSP----PR-GSPRRIRGSPVRRRSPLPLRRR 314
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 25.8 bits (54), Expect(2) = 4.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPPPP
Sbjct: 771 PPPTAPPPPP 780
Score = 21.8 bits (44), Expect(2) = 4.2
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 40 PXXPPPXXPPPP 5
P PPP PP P
Sbjct: 731 PPPPPPPAPPTP 742
>At1g70990.1 68414.m08190 proline-rich family protein
Length = 176
Score = 25.0 bits (52), Expect(2) = 5.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 40 PXXPPPXXPPPP 5
P PPP PPPP
Sbjct: 93 PPSPPPPSPPPP 104
Score = 22.6 bits (46), Expect(2) = 5.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PP PP
Sbjct: 109 PPPPLPPSPP 118
>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
protein
Length = 513
Score = 29.1 bits (62), Expect = 5.1
Identities = 24/75 (32%), Positives = 28/75 (37%)
Frame = -3
Query: 523 PGEXSTPPVVAAAXSXTTSGLXQAFXRTPAQVLQPHSPAFQTQSXVDPIHLKXCPVSAPV 344
PG S PP + S +SG +F TPA P S F T S P P P
Sbjct: 397 PG-GSNPPQTSVPTSNPSSGAGFSFLNTPAS--GPSSSLFATPSSTAPTSSLFGPSPTPT 453
Query: 343 DLGLXNVSMSHXPGS 299
L S + GS
Sbjct: 454 QTPLFGSSPASTFGS 468
>At2g31220.1 68415.m03813 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 458
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 96 HVXPXTCVRRXSXTLXHXHLXXPPPPXPP 10
H+ P C + S L H+ PPPP PP
Sbjct: 63 HLSPQDCPQASSTPL-QFHINPPPPPPPP 90
>At4g33660.1 68417.m04781 expressed protein
Length = 76
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 27 PPQYYPPPPPPPPPPPPP 44
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 71 EGXPXPCXIXT*XXPPXPPPPXP 3
+G P P + PP PPPP P
Sbjct: 18 QGPPPPVGVPPQYYPPPPPPPPP 40
>At3g51290.1 68416.m05614 proline-rich family protein
Length = 602
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 68 PPSPSPPPPPPPRPPPPP 85
>At3g50180.1 68416.m05486 hypothetical protein
Length = 588
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 25 PPPQPPPPPPPPPPPPPP 42
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 376 PPSPPPPPPPPPPPPPPP 393
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 377 PSPPPPPPPPPPPPPPPP 394
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 379 PPPPPPPPPPPPPPPPPP 396
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 380 PPPPPPPPPPPPPPPPPP 397
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 381 PPPPPPPPPPPPPPPPPP 398
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 382 PPPPPPPPPPPPPPPPPP 399
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 383 PPPPPPPPPPPPPPPPPP 400
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 384 PPPPPPPPPPPPPPPPPP 401
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 385 PPPPPPPPPPPPPPPPPP 402
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 386 PPPPPPPPPPPPPPPPPP 403
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 387 PPPPPPPPPPPPPPPPPP 404
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 388 PPPPPPPPPPPPPPPPPP 405
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 389 PPPPPPPPPPPPPPPPPP 406
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 390 PPPPPPPPPPPPPPPPPP 407
>At3g19320.1 68416.m02450 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560;
Length = 493
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 56 PEDYLPLPPPPQTPPPPP 73
>At2g40820.1 68415.m05038 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 903
Score = 28.7 bits (61), Expect = 6.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 55 PVXXXPXXPPPXXPPPPP 2
P P PPP PPPPP
Sbjct: 753 PQMQQPYYPPPMQPPPPP 770
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 25.8 bits (54), Expect(2) = 7.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 31 PPPXXPPPPP 2
PPP PPPPP
Sbjct: 75 PPPQPPPPPP 84
Score = 21.0 bits (42), Expect(2) = 7.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 40 PXXPPPXXPPPP 5
P PPP PPP
Sbjct: 33 PYTPPPPQLPPP 44
>At3g20720.1 68416.m02622 expressed protein
Length = 1083
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -3
Query: 463 LXQAFXRTPAQVLQPHSPAFQTQSXVDPIHLKXCPVSAPVDLG 335
L AF R+P ++QP A + CP+ P+D G
Sbjct: 314 LRDAFSRSPCALIQPSMKAAAEDLAIPDFAKNFCPLIYPLDSG 356
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -3
Query: 97 PRXAXHVRTKXFLXPVXXXPXXPPPXXPPPPP 2
P H L P PPP PPPPP
Sbjct: 22 PAINQHQNQNPSLIPTRFFLPHPPPPPPPPPP 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,308
Number of Sequences: 28952
Number of extensions: 304119
Number of successful extensions: 3803
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2365
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2598660928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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