BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030905E5_H12_e480_16.seq (1529 letters) Database: uniref50 1,657,284 sequences; 575,637,011 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 87 9e-16 UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 74 9e-12 UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 73 2e-11 UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 66 2e-09 UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 61 9e-08 UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 58 5e-07 UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 56 3e-06 UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 55 4e-06 UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 54 1e-05 UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n... 52 4e-05 UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 52 4e-05 UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 51 9e-05 UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 50 2e-04 UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 47 0.001 UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1; Encepha... 44 0.008 UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9; Euryar... 44 0.008 UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|R... 43 0.025 UniRef50_Q7QNK8 Cluster: ENSANGP00000015156; n=1; Anopheles gamb... 35 6.5 >UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens (Human) Length = 69 Score = 87.4 bits (207), Expect = 9e-16 Identities = 40/51 (78%), Positives = 46/51 (90%) Frame = +2 Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 265 +P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57 >UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukaryota|Rep: 40S ribosomal protein S28 - Schizosaccharomyces pombe (Fission yeast) Length = 68 Score = 74.1 bits (174), Expect = 9e-12 Identities = 35/49 (71%), Positives = 42/49 (85%) Frame = +2 Query: 116 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 262 P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55 >UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to ribosomal protein S28 - Pan troglodytes Length = 356 Score = 73.3 bits (172), Expect = 2e-11 Identities = 34/44 (77%), Positives = 39/44 (88%) Frame = +2 Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 244 +P LARV KVLGRTGSQGQCTQV+V+F+ +TSR IIRNVKGPV Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVKFMDDTSRSIIRNVKGPV 50 >UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magnoliophyta|Rep: 40S ribosomal protein S28-1 - Arabidopsis thaliana (Mouse-ear cress) Length = 64 Score = 66.5 bits (155), Expect = 2e-09 Identities = 34/53 (64%), Positives = 42/53 (79%) Frame = +2 Query: 107 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 265 MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+GDILT Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52 >UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa group|Rep: Ribosomal protein S28e - Aspergillus fumigatus (Sartorya fumigata) Length = 56 Score = 60.9 bits (141), Expect = 9e-08 Identities = 28/43 (65%), Positives = 35/43 (81%) Frame = +2 Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 241 +P L +V +VLGRTGS+G TQV+VEF+ +TSR IIRNVKGP Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGP 48 >UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein; n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like protein - Magnaporthe grisea (Rice blast fungus) (Pyricularia grisea) Length = 85 Score = 58.4 bits (135), Expect = 5e-07 Identities = 27/43 (62%), Positives = 34/43 (79%) Frame = +2 Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 241 +P L +V +VLGRTGS+G TQV+VEF+ + SR IIRNVKGP Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQSRSIIRNVKGP 48 >UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630014M24 product:hypothetical protein, full insert sequence; n=2; Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630014M24 product:hypothetical protein, full insert sequence - Mus musculus (Mouse) Length = 148 Score = 55.6 bits (128), Expect = 3e-06 Identities = 27/43 (62%), Positives = 30/43 (69%) Frame = -3 Query: 255 SPSRTGPFTFLMI*RLVSPMNSTLT*VHCPCDPVRPSTFTTRA 127 SP RTGP TF M RLVS ++ST T HCPC+PV PST T A Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAHCPCEPVLPSTLVTLA 126 >UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular organisms|Rep: 30S ribosomal protein S28e - Methanopyrus kandleri Length = 74 Score = 55.2 bits (127), Expect = 4e-06 Identities = 28/47 (59%), Positives = 34/47 (72%), Gaps = 2/47 (4%) Frame = +2 Query: 128 ARVVKVLGRTGSQGQCTQVKVEFI--GETSRQIIRNVKGPVRDGDIL 262 A VV++LGRTG G+ TQVKV + + R I RNVKGPVR+GDIL Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDIL 61 >UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1; Trypanosoma brucei|Rep: 40S ribosomal protein S33, putative - Trypanosoma brucei Length = 103 Score = 54.0 bits (124), Expect = 1e-05 Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 5/49 (10%) Frame = +2 Query: 134 VVKVLGRTGSQGQCTQVKVEFIG-----ETSRQIIRNVKGPVRDGDILT 265 ++KVLGRTGS+G TQV+V + E +R I+RNVKGP ++GD+L+ Sbjct: 43 IIKVLGRTGSRGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLS 91 >UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1; Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry - Gallus gallus Length = 112 Score = 52.0 bits (119), Expect = 4e-05 Identities = 26/53 (49%), Positives = 34/53 (64%) Frame = -2 Query: 301 SKSPGFTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEH 143 ++ P LRLE+G+DVS+ R LHV DD A + ELH LS L L +G A+H Sbjct: 56 AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHELHAHLSALPLGAGPAQH 108 >UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archaea|Rep: 30S ribosomal protein S28e - Methanococcus jannaschii Length = 75 Score = 52.0 bits (119), Expect = 4e-05 Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 2/52 (3%) Frame = +2 Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 262 K V A V++V+GRTG G QV+ + +G +T R ++RNVKGPV+ GDI+ Sbjct: 8 KEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVKVGDII 59 >UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|Rep: IP17744p - Drosophila melanogaster (Fruit fly) Length = 73 Score = 50.8 bits (116), Expect = 9e-05 Identities = 21/44 (47%), Positives = 32/44 (72%) Frame = +2 Query: 128 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 259 ARV+K+L R G++G T+V+V+ + + Q +R VKGPVR GD+ Sbjct: 7 ARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50 >UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella natans|Rep: Ribosomal protein S28 - Bigelowiella natans (Pedinomonas minutissima) (Chlorarachnion sp.(strain CCMP 621)) Length = 65 Score = 49.6 bits (113), Expect = 2e-04 Identities = 22/43 (51%), Positives = 31/43 (72%) Frame = +2 Query: 134 VVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 262 V K+L + G +GQ TQV+V+ I + +IRN+KGPVR GDI+ Sbjct: 13 VTKILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIV 55 >UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus solfataricus Length = 83 Score = 47.2 bits (107), Expect = 0.001 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%) Frame = +2 Query: 128 ARVVKVLGRTGSQGQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 262 A V+++L RTG G+ TQV+V + + R + RNVKGPVR GDIL Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVRVGDIL 67 >UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1; Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S28 - Encephalitozoon cuniculi Length = 65 Score = 44.4 bits (100), Expect = 0.008 Identities = 24/51 (47%), Positives = 29/51 (56%) Frame = +2 Query: 110 DKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 262 ++ V VLGRTG G TQVK+E + R I R VKGPV GDI+ Sbjct: 3 EQQEFFGEVTHVLGRTGGSGLLTQVKMELM-HNKRTIQRAVKGPVAVGDII 52 >UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9; Euryarchaeota|Rep: 30S ribosomal protein S28e - Halobacterium salinarium (Halobacterium halobium) Length = 74 Score = 44.4 bits (100), Expect = 0.008 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 2/47 (4%) Frame = +2 Query: 128 ARVVKVLGRTGSQGQCTQVK--VEFIGETSRQIIRNVKGPVRDGDIL 262 A V++V+G+TG G+ QVK ++ G R I RNV GPVR GD++ Sbjct: 13 AEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVRVGDVI 59 >UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|Rep: OTTHUMP00000028879 - Homo sapiens (Human) Length = 57 Score = 42.7 bits (96), Expect = 0.025 Identities = 20/37 (54%), Positives = 26/37 (70%) Frame = +2 Query: 116 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 226 P L + KVLGRT SQGQCT+V VEF+ S+++ R Sbjct: 8 PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44 >UniRef50_Q7QNK8 Cluster: ENSANGP00000015156; n=1; Anopheles gambiae str. PEST|Rep: ENSANGP00000015156 - Anopheles gambiae str. PEST Length = 41 Score = 34.7 bits (76), Expect = 6.5 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +1 Query: 154 HRITGTVYSGQSGVHRRD*PSDHQER 231 +RI GTVY G+ GV R PSDH +R Sbjct: 16 YRIPGTVYPGKGGVPERAKPSDHPQR 41 Database: uniref50 Posted date: Oct 5, 2007 11:19 AM Number of letters in database: 575,637,011 Number of sequences in database: 1,657,284 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 884,206,470 Number of Sequences: 1657284 Number of extensions: 13830553 Number of successful extensions: 22107 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 21470 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 22094 length of database: 575,637,011 effective HSP length: 104 effective length of database: 403,279,475 effective search space used: 163328187375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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