Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H12_e480_16.seq
         (1529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37831| Best HMM Match : MAM (HMM E-Value=0)                         30   4.3  
SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)                        30   4.3  
SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.9  

>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
          Length = 563

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 149 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 259
           G  G + Q  QV + + GET + ++  V+G    GDI
Sbjct: 151 GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 187


>SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)
          Length = 89

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 149 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 259
           G  G + Q  QV + + GET + ++  V+G    GDI
Sbjct: 22  GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 58


>SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -3

Query: 201 PMNSTLT*VHCPCDPVRPSTFTTRARTLGLSILNYISSFEKXLVPNXLQPGGXH*XLERP 22
           P+N++   V+  C+PV      +      ++ILN  +S ++ L+ +   P G    + R 
Sbjct: 139 PVNNSCEPVNNSCEPVNNCVNMSTTDAATMNILNQSNSLQQKLIRSYFSPVGIEYSIGRV 198

Query: 21  P 19
           P
Sbjct: 199 P 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,504,163
Number of Sequences: 59808
Number of extensions: 434028
Number of successful extensions: 719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4976817448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)