BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030905E5_H12_e480_16.seq (1529 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37831| Best HMM Match : MAM (HMM E-Value=0) 30 4.3 SB_8910| Best HMM Match : MAM (HMM E-Value=1.9) 30 4.3 SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.9 >SB_37831| Best HMM Match : MAM (HMM E-Value=0) Length = 563 Score = 30.3 bits (65), Expect = 4.3 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 149 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 259 G G + Q QV + + GET + ++ V+G GDI Sbjct: 151 GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 187 >SB_8910| Best HMM Match : MAM (HMM E-Value=1.9) Length = 89 Score = 30.3 bits (65), Expect = 4.3 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 149 GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 259 G G + Q QV + + GET + ++ V+G GDI Sbjct: 22 GNQGQRWQMAQVPINYTGETIQLLLEGVRGSDYTGDI 58 >SB_25996| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 429 Score = 29.1 bits (62), Expect = 9.9 Identities = 15/61 (24%), Positives = 29/61 (47%) Frame = -3 Query: 201 PMNSTLT*VHCPCDPVRPSTFTTRARTLGLSILNYISSFEKXLVPNXLQPGGXH*XLERP 22 P+N++ V+ C+PV + ++ILN +S ++ L+ + P G + R Sbjct: 139 PVNNSCEPVNNSCEPVNNCVNMSTTDAATMNILNQSNSLQQKLIRSYFSPVGIEYSIGRV 198 Query: 21 P 19 P Sbjct: 199 P 199 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 27,504,163 Number of Sequences: 59808 Number of extensions: 434028 Number of successful extensions: 719 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 627 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 718 length of database: 16,821,457 effective HSP length: 85 effective length of database: 11,737,777 effective search space used: 4976817448 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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