Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H12_e480_16.seq
         (1529 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28 pro...    87   1e-16
L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28 pro...    87   1e-16
CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.                87   1e-16
BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28 p...    87   1e-16
BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28 p...    87   1e-16
BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28 p...    87   1e-16
BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28 p...    87   1e-16
AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28 p...    87   1e-16
AL023513-1|CAI19979.1|   57|Homo sapiens protein ( Human DNA seq...    43   0.003

>U58682-1|AAB07066.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 265
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>L05091-1|AAC15855.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 265
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>CR457055-1|CAG33336.1|   69|Homo sapiens RPS28 protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 265
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC070218-1|AAH70218.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 265
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC070217-1|AAH70217.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 265
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC021239-1|AAH21239.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 265
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>BC000354-1|AAH00354.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 265
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>AB061846-1|BAB79484.1|   69|Homo sapiens ribosomal protein S28
           protein.
          Length = 69

 Score = 87.4 bits (207), Expect = 1e-16
 Identities = 40/51 (78%), Positives = 46/51 (90%)
 Frame = +2

Query: 113 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 265
           +P  LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7   QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57


>AL023513-1|CAI19979.1|   57|Homo sapiens protein ( Human DNA
           sequence from clone RP1-268D13 on chromosome
           22q11.21-12.2.  ).
          Length = 57

 Score = 42.7 bits (96), Expect = 0.003
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +2

Query: 116 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 226
           P  L +  KVLGRT SQGQCT+V VEF+   S+++ R
Sbjct: 8   PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,170,333
Number of Sequences: 237096
Number of extensions: 2294959
Number of successful extensions: 2602
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2602
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 22800599744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)