Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_H11_e472_15.seq
(1495 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 7e-04
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 37 0.006
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 32 0.18
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 31 0.54
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 29 1.7
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 29 2.2
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 5.0
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 6.7
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 27 6.7
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 27 8.8
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 27 8.8
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 8.8
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 27 8.8
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 8.8
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 40.3 bits (90), Expect = 7e-04
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 654 SSIAAKMMQIMGWS-GGGLGVDEQGISEPIKPNLQMVKRAGLGS 782
S+++ KM+ MGW+ G GLG +E GI E I+P + + GLG+
Sbjct: 491 SNVSMKMLNSMGWNKGSGLGTNENGIKEAIQPTMYL-PGVGLGN 533
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 37.1 bits (82), Expect = 0.006
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 654 SSIAAKMMQIMGWSGG-GLGVDEQGISEPIKPNLQMVKRAGLGSNVKGMHXLRRAAL 821
+ AKM++ MG+ G GLG + +GI+EP++ L+ +R GLG+ + R+ A+
Sbjct: 116 TGFGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLR-PERVGLGAVRERTEKQRKEAI 171
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 32.3 bits (70), Expect = 0.18
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 645 AIESSIAAKMMQIMGWS-GGGLGVDEQGISEPI 740
AI + +++++MGWS G GLG + QG+ +P+
Sbjct: 143 AINNGKGKQLLEMMGWSRGKGLGSENQGMVDPV 175
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 30.7 bits (66), Expect = 0.54
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 651 ESSIAAKMMQIMGW-SGGGLGVDEQGISEPI 740
+ ++A KM+Q GW G GLG QGI P+
Sbjct: 252 KENVALKMLQRCGWKEGQGLGQHNQGIINPL 282
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 367 SLLAQGLISRTILPNSVLNIFCLKHLISKHFIFNISSR 254
S + Q LI + ++LNIFC L+ K ++F++ S+
Sbjct: 170 SRVIQKLIPQLPTLENLLNIFCSNSLVEKAYLFDVLSK 207
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 860 VNGIRLLEALHQFQCGSTQXVHALHVTAK 774
+ + + E +F+CG TQ H L VTA+
Sbjct: 110 IQSMSITEVFGEFRCGKTQMSHTLCVTAQ 138
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 117 SDNDSSHTTNEDN---EGQTKPEIETQNIEITKQLQEQKYPEKADSNQYLEEML 269
S++D + ++D+ E QTK E + +N T+ ++EQK EK + +E L
Sbjct: 721 SEDDFENEESDDDKIFEQQTKIEDDVKNENKTEPVEEQKSEEKNEQPNLKKEEL 774
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -3
Query: 638 KDSILTWPRDVPNADPRVPVRDPLLFHNHTY 546
KDS+L++ +D +++ ++ V +P NH Y
Sbjct: 659 KDSVLSFQKDCLHSNKQIEVLNPTKHSNHLY 689
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 632 CLWNSYR---EQYRCQNDADYGVVWRRFGSRRTRYIGTH 739
CLW ++ + Y A+ V RRF S TR + TH
Sbjct: 130 CLWRLHKFPPDIYHLSVSAELVQVGRRFNSLSTRLVSTH 168
>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 108 VPSSDNDSSHTTNEDNEGQTK-PEIETQNIEITKQLQEQ 221
+ SSDN SS T NE+ ++K P + + E+ ++ +E+
Sbjct: 156 ISSSDNSSSSTGNEEVRNRSKLPSSKKEREELFRKRKEE 194
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +3
Query: 459 IVAEAAGDTKLEARSAVETVAWNRLSESMVSVVVKEQW 572
IVAEAA + ++ ++S +E ++ L ES+ + ++W
Sbjct: 105 IVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRW 142
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +3
Query: 90 SARIAFVPSSDNDSSHTTNEDNEGQTKPEIETQNIEITKQLQEQKYPEKA 239
S ++FVPSS + + + + E T++I ++ E ++PE++
Sbjct: 520 SPTLSFVPSSHSMEQGNGSVASANNAQSEAATRSINSISEVSEVRFPEQS 569
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 111 PSSDNDSSHTTNEDNEGQTKPEIETQNIEITKQLQEQKYPEKADSNQYLEEMLKMKC 281
P SD + + DN + ++ET +EI+++ Q + A +QYL E K KC
Sbjct: 193 PDSDPVETESVYVDNGELSNQKVET--VEISEKEQND---DPAGYSQYLLEFKKSKC 244
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 198 ITKQLQEQKYPEKADSNQYLEEMLKMKCLDMRCFKQNM 311
++ ++ Q PE+ DS YL + + C D RC Q +
Sbjct: 55 LSNVVESQTIPEE-DSTSYLNRLEEAFCRDFRCCGQTL 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,260,829
Number of Sequences: 5004
Number of extensions: 82551
Number of successful extensions: 265
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 834495254
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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