Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_H11_e472_15.seq
(1495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 46 8e-05
12_02_1111 - 26157796-26160330 40 0.004
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 36 0.082
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 36 0.11
01_05_0166 + 18844468-18845184,18847394-18847690 33 0.58
01_05_0604 - 23583244-23584989 32 1.3
05_07_0219 - 28474661-28475146,28475979-28476644 31 1.8
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 31 1.8
03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142... 31 2.3
12_02_1038 - 25596027-25596393,25596492-25596660,25597283-255973... 30 5.4
03_04_0185 - 18213830-18214552 29 7.2
03_05_1078 + 30205876-30206346,30206624-30207001,30207967-302080... 29 9.5
01_03_0007 - 11578510-11578868,11579144-11579213 29 9.5
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 46.0 bits (104), Expect = 8e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = +3
Query: 606 DVSGPSEDTVFGTAIESSIAAKMMQIMGWSGGGLGVDEQGISEPIKPNLQMVKRAGLG 779
+ G + +V S++ +++Q MGW G GLG +EQGI+EPIK ++ K G+G
Sbjct: 46 ETEGLEQASVDTQLTSSNVGFRLLQKMGWKGKGLGKNEQGITEPIKAGIRDAK-LGVG 102
>12_02_1111 - 26157796-26160330
Length = 844
Score = 40.3 bits (90), Expect = 0.004
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 639 GTAIESSIAAKMMQIMGWSGG-GLGVDEQGISEPIKPNLQMVKRAGLGS 782
G+ ++ AKMM +MG+ G GLG +EQGI P++ L+ K AGLGS
Sbjct: 178 GSLGSNTKVAKMMAMMGYKDGMGLGKNEQGIVAPVETTLR-PKNAGLGS 225
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 35.9 bits (79), Expect = 0.082
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 666 AKMMQIMGW-SGGGLGVDEQGISEPIKPNLQMVKRAGLG 779
+KMM MG+ G GLG D QG+ +PI+P +Q K GLG
Sbjct: 615 SKMMAKMGFIEGTGLGKDGQGMMQPIQP-IQRPKSLGLG 652
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 35.5 bits (78), Expect = 0.11
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 609 VSGPSEDTVFGTAIESSIAAKMMQIMGW-SGGGLGVDEQGISEPIKPNLQMVKRAGLG 779
+ G S D F ++ +S A KMM+ MGW G LG +G+ EPI+P + AGLG
Sbjct: 402 MGGASVDMNFRSSGLNS-AKKMMENMGWKEGEALGKSTKGMVEPIQPTVNK-HGAGLG 457
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 33.1 bits (72), Expect = 0.58
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 639 GTAIESSIAAKMMQIMGWSGG-GLGVDEQGISEPI 740
G + + A +MM MGW G GLG EQGI+ P+
Sbjct: 163 GAGGQMTAAQRMMARMGWKEGQGLGKQEQGITAPL 197
>01_05_0604 - 23583244-23584989
Length = 581
Score = 31.9 bits (69), Expect = 1.3
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 639 GTAIESSIAAKMMQIMGWS-GGGLGVDEQGISEPIKPNLQMVKRAGLG 779
G+ + I A++M M + G GLG GI +PIKP ++ K G+G
Sbjct: 93 GSLATNQIVARLMAQMNYEEGAGLGKYGHGIIDPIKPTIKYGK-GGIG 139
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 31.5 bits (68), Expect = 1.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -1
Query: 718 SSTPKPPPDHPXXXXXXXXXXXXXAVPKTVSSLGPETSLTLILESP 581
++TP PPP P A P + + P TS TL+ P
Sbjct: 83 ATTPHPPPPSPATSSSRTATATATATPTSPTPTPPPTSATLLWPRP 128
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 31.5 bits (68), Expect = 1.8
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 561 KEQWIAHGDSRISVRDVSGPSEDTVFGTAIES---SIAAKMMQIMGWSGG-GLGVDEQGI 728
+++ + G + +++SG +T E +A+KMM MG+ G GLGV QG+
Sbjct: 271 EDESVHQGLGLLESKNLSGVQTETAIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGM 330
Query: 729 SEPI 740
+PI
Sbjct: 331 LDPI 334
>03_01_0177 +
1424773-1424850,1425307-1425391,1425498-1425577,
1425771-1425898,1425962-1426049,1426187-1426277,
1426712-1426881,1427151-1427438,1427527-1427643,
1427924-1427976,1428029-1428090,1429042-1429118,
1429269-1429322,1429417-1429476,1429581-1429658,
1429805-1429851,1429933-1430051,1430280-1430364,
1430443-1430557,1430662-1430784,1430869-1430969,
1431346-1431475
Length = 742
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 609 VSGPSEDTVFGTAIESSIAAKMMQIMGWSGG-GLGVDEQGISEPIK 743
++ P + + S A ++M+ MGW G GLG D+QGI ++
Sbjct: 1 MAAPEAPSCYVGIARQSAAFRLMKQMGWEEGEGLGKDKQGIKGHVR 46
>12_02_1038 -
25596027-25596393,25596492-25596660,25597283-25597349,
25597617-25597794,25599157-25599228,25599311-25599717,
25600035-25600740,25600829-25600998,25601963-25602022,
25602385-25602435
Length = 748
Score = 29.9 bits (64), Expect = 5.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 141 TNEDNEGQTKPEIETQNIEITKQLQEQKYPEKADSNQ 251
TN++ +G+ P E +I L +Q PEK DS+Q
Sbjct: 163 TNQNTDGKKDPTTEQDRTDIEFVLLDQCGPEKMDSSQ 199
>03_04_0185 - 18213830-18214552
Length = 240
Score = 29.5 bits (63), Expect = 7.2
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 943 EARPAXLGTXAGGHGPP*LKSLXNXRSKSMV-SDF 842
E P GT AGG+G P S N RS+S V +DF
Sbjct: 48 ETEPDDDGTGAGGNGAPSGLSASNKRSRSQVWNDF 82
>03_05_1078 +
30205876-30206346,30206624-30207001,30207967-30208092,
30209569-30209805
Length = 403
Score = 29.1 bits (62), Expect = 9.5
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 654 SSIAAKMMQIMGWSGGGLGVDEQGISEPIKPNLQMV--KRAGLGSNVKGMHXLRRAALKL 827
++I ++M ++G GGG G E+G E ++ ++ +R G G++V+ R ++
Sbjct: 76 TNIHRRVMDVLGRMGGGGGGGEKGEGEEMEEEEEVPQRRRRGQGADVESSRGFRH-MMRE 134
Query: 828 MQRFQKSDTIDLDL 869
QR +K DL
Sbjct: 135 RQRREKLSQSYADL 148
>01_03_0007 - 11578510-11578868,11579144-11579213
Length = 142
Score = 29.1 bits (62), Expect = 9.5
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 626 GYCLWNSYREQYRCQNDADYGV-VWRRFGSRRTRYIG 733
G+ LW E+ R + D DYGV R+ G RRT IG
Sbjct: 94 GWRLWGGVVEEGR-EEDGDYGVKSSRKGGRRRTEIIG 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,024,108
Number of Sequences: 37544
Number of extensions: 608676
Number of successful extensions: 1830
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4780068496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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