Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H11_e472_15.seq
         (1495 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.78 
SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24)           32   1.4  
SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8)                   31   2.4  
SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)                31   2.4  
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.1  
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_31642| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.1  
SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34)                 30   4.1  
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       30   5.5  
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)                    29   7.2  
SB_45734| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.6  

>SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 32.7 bits (71), Expect = 0.78
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +3

Query: 624 EDTVFGTAIESSIAAKMMQIMGWSG--GGLGVDEQGISEPIKPNLQMVKRAGLGSN 785
           +D++ G   + ++  ++++ MGW G   GLG   QG++EPI       +  GLG++
Sbjct: 124 QDSI-GFIPQDNLGYRLLKKMGWRGYGTGLGKSSQGLAEPITATGVARRELGLGAS 178


>SB_4002| Best HMM Match : Galactosyl_T (HMM E-Value=3.1e-24)
          Length = 683

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +3

Query: 150 DNEGQTKPEIETQNIEITKQLQEQKYPEKADSNQYLEEMLKMKCLDMRCFKQ 305
           D E +T+ E +T+N E  KQ +++K  EK  +++  ++  KM     RC KQ
Sbjct: 358 DTEEKTEKEEKTENEEKPKQKEKEKEKEKRPASKLDKKTQKMIADLQRCKKQ 409


>SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8)
          Length = 571

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 75  EAPVKSARIAFVPSSDNDSSHTTNEDNEGQTKP-EIETQNIEITKQLQEQKYPEKADSNQ 251
           + PVKS  + F   SD+D      ED  G+T+P   E + +E+ ++  +Q +  + D ++
Sbjct: 119 KTPVKSRGVRFFSVSDDDHDIDDQEDVSGRTQPANKEVEKMEVIRE-DKQCWTHEPDYDR 177

Query: 252 YL 257
            L
Sbjct: 178 SL 179


>SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)
          Length = 396

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 609 VSGPSEDTVFGTAIESSIAAKMMQIMGWSGG-GLGVDEQGIS 731
           V+G  E    G A+ +++A+ +M   GW  G GLG  EQGI+
Sbjct: 218 VTGDKEKPDLGFAV-NAVASSIMAKYGWKDGQGLGKSEQGIN 258


>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 110 HKSNPSRLHWGLVPNXLQPGGXH*XLERPPPR 15
           HK NP  + W   P   Q    +  LERPPPR
Sbjct: 32  HKGNPISVGWDREPKNGQRAPINDFLERPPPR 63


>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 168 KPEIETQNIEITKQLQEQKYPEKADSNQYLEEMLKMKCLDMR 293
           K E+E    E  +QLQ QK  E  D    LE+ +K +  +MR
Sbjct: 788 KQELEDYKREFQQQLQRQKQTELEDKQSELEKKIKSQENEMR 829


>SB_31642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
 Frame = +3

Query: 108 VPSSDNDSSHTTNEDNEGQTKPEIETQNIEITKQLQEQKYP-EKADSNQY---LEEMLKM 275
           V    N   H+T  ++EG  K   ET  I+++ +++ +K P +K   ++Y     E+LK+
Sbjct: 35  VNGESNLEIHSTYTNDEGDKKENSETNIIDLSSEIKHEKIPNDKLIISEYGHMKNELLKL 94

Query: 276 KCLDMRCFKQNMFNTEFGRMVLLIRPWASKLWNIQASCQASKAQVTSGYENKRFS 440
           +       ++    T   R+  + +   SK++ +    +  KA++ S  +   FS
Sbjct: 95  QEEYESSLQRE--RTACERLQTVHKEADSKIYRLSQVNEELKAELDSLIKESNFS 147


>SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 690 WSGGGLGVDEQGIS-----EPIKPNLQMVKRAGLGSNVKGMHXLRRA 815
           WSGGG G+    +S       +K  L++V +  L  N++ +H +R A
Sbjct: 331 WSGGGRGIVRVDVSLDGGGSSLKRKLELVGQHSLFGNIESLHAIRLA 377


>SB_51944| Best HMM Match : LRR_1 (HMM E-Value=7.7e-34)
          Length = 409

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 168 KPEIETQNIEITKQLQEQKYPEKADSNQYLEEMLKMKCLDMR 293
           K E+E    E  +QLQ QK  E  D    LE+ +K +  +MR
Sbjct: 16  KQELEDYKREFQQQLQRQKQTELEDKQSELEKKIKSQENEMR 57


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 622 LGPETSLTLILESPCAIHCSFTTTLTIDSLNLFQATVSTALRASNLVSP 476
           LGP+  +T   E PC IH  +T+  T  + +L      T+ R  N  +P
Sbjct: 542 LGPDIEITPCNEHPCPIHGGYTSWTTFTTCSL-TCGGGTSYRYRNCTNP 589


>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
          Length = 957

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +3

Query: 108 VPSSDNDSSHTTNEDNEGQTKPEIETQNIEITKQLQEQKYPEKADSNQYLEEMLKMKCLD 287
           VP  +  + H  N D E + K   E +  E  KQ++++   E   +  YL+EM+K +C D
Sbjct: 37  VPDLEKLARHEFNMDEEERHKMVAEGE--EKIKQVRDELEMENL-ARIYLKEMIKRECWD 93

Query: 288 MRCFKQNMFN 317
               K    N
Sbjct: 94  AMAVKGRSCN 103


>SB_45734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +3

Query: 558 VKEQWIAHGDSRISVRDVSGPSEDTVFGTAIESSIAAKMMQIMGWSGGGLGVDEQGISEP 737
           +K+Q    G  R++V D++ P+  +     I+  IA +  Q MG  GGG   DEQ   + 
Sbjct: 135 IKQQQPDDGIQRMNV-DINDPNSASRLAEQIKQQIAEQ--QAMGGGGGGDDDDEQDDDDE 191

Query: 738 IKP 746
            +P
Sbjct: 192 QEP 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,270,464
Number of Sequences: 59808
Number of extensions: 645182
Number of successful extensions: 2043
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2037
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4835964124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)