Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_H11_e472_15.seq
(1495 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ... 48 2e-05
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ... 48 2e-05
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 0.001
At1g17070.1 68414.m02077 D111/G-patch domain-containing protein ... 40 0.003
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ... 37 0.039
At3g52350.1 68416.m05754 D111/G-patch domain-containing protein ... 36 0.052
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 36 0.069
At5g08535.1 68418.m01014 D111/G-patch domain-containing protein ... 34 0.21
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 34 0.21
At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein ... 33 0.48
At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ... 33 0.64
At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp... 31 2.0
At5g08535.2 68418.m01015 D111/G-patch domain-containing protein ... 31 2.6
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 29 7.9
>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 47.6 bits (108), Expect = 2e-05
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +3
Query: 594 ISVRDVSGPSEDTVFGTAIESSIAAKMMQIMGWSGGGLGVDEQGISEPIKPNLQMVKRAG 773
+ + DV S D + S++ +++Q MGW G GLG EQGI+EPIK ++ +R G
Sbjct: 50 VDLEDVEQASLDVKISS---SNVGFRLLQKMGWKGKGLGKQEQGITEPIKSGIR-DRRLG 105
Query: 774 LG 779
LG
Sbjct: 106 LG 107
>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 47.6 bits (108), Expect = 2e-05
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +3
Query: 594 ISVRDVSGPSEDTVFGTAIESSIAAKMMQIMGWSGGGLGVDEQGISEPIKPNLQMVKRAG 773
+ + DV S D + S++ +++Q MGW G GLG EQGI+EPIK ++ +R G
Sbjct: 50 VDLEDVEQASLDVKISS---SNVGFRLLQKMGWKGKGLGKQEQGITEPIKSGIR-DRRLG 105
Query: 774 LG 779
LG
Sbjct: 106 LG 107
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 41.9 bits (94), Expect = 0.001
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +3
Query: 651 ESSIAAKMMQIMGW-SGGGLGVDEQGISEPIKPNLQMVKRAGLGSNVK 791
ES++ +M++ MGW G GLG D G+ EP++ + +RAGLGS K
Sbjct: 1026 ESNVGNRMLRNMGWHEGSGLGKDGSGMKEPVQAQ-GVDRRAGLGSQQK 1072
>At1g17070.1 68414.m02077 D111/G-patch domain-containing protein
Similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 849
Score = 40.3 bits (90), Expect = 0.003
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +3
Query: 660 IAAKMMQIMGWSGGGLGVDEQGISEPIKPNLQMVKRAGLGSN 785
I K+++ MG+ GGGLG ++QGI PI+ L+ K G+G N
Sbjct: 203 IGMKLLEKMGYKGGGLGKNQQGIVAPIEAQLR-PKNMGMGYN 243
>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 752
Score = 36.7 bits (81), Expect = 0.039
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +3
Query: 660 IAAKMMQIMGWSGGGLGVDEQGISEPIKPNLQMVKRAGLGSN 785
I K+++ MG+ G GLG ++QGI PI+ L+ K G+G N
Sbjct: 106 IGMKLLEKMGYKGRGLGKNQQGIVAPIEVQLR-PKNMGMGYN 146
>At3g52350.1 68416.m05754 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 180
Score = 36.3 bits (80), Expect = 0.052
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +3
Query: 573 IAHGDSRISVRDVSGPSEDTVFGTAIESS-IAAKMMQIMGWSGG-GLGVDEQGISEPIKP 746
I+H ++S + SE + TAI SS I ++++ GW G GLG+ EQGI P++
Sbjct: 53 ISHYSEKVS-NVIGDSSESSNPSTAISSSNIGFQLLKKHGWKEGTGLGITEQGILVPLQA 111
Query: 747 NLQMVKRAGLGS 782
+ K+ GLG+
Sbjct: 112 EPKHNKQ-GLGA 122
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 35.9 bits (79), Expect = 0.069
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 666 AKMMQIMGW-SGGGLGVDEQGISEPIKPNLQMVKRAGLG 779
+KMM MG+ GGGLG D +GI++PI+ +Q K GLG
Sbjct: 640 SKMMAKMGFIDGGGLGKDGKGIAQPIEA-VQRPKSLGLG 677
>At5g08535.1 68418.m01014 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain; contains
a 2nt micro-exon, as identified using GeneSeqer.
Length = 141
Score = 34.3 bits (75), Expect = 0.21
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 549 SVVVKEQW-IAHGDSRISVRDVSGPSEDTVFGTAI--ESSIAAKMMQIMGWSGG-GLGVD 716
S V W + +R V V G S + A S+I ++++ GW G GLG+
Sbjct: 4 SSVSTSSWAVIESANRFQVSSVMGESSGSSSSLAAINSSNIGFQLLKKHGWKEGTGLGIA 63
Query: 717 EQGISEPIKPNLQMVKRAGLGS 782
EQGI P++ + KR G+G+
Sbjct: 64 EQGILVPLQAEPKHNKR-GVGA 84
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 34.3 bits (75), Expect = 0.21
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 615 GPSEDTVFGTAI--ESSIAAKMMQIMGWSGG-GLGVDEQGISEPIKPNLQMVKRAGL 776
G SE + G + + A +MM MGW G GLG EQGI+ P+ + +RAG+
Sbjct: 200 GKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKSEQGITTPLMAK-KTDRRAGV 255
>At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 497
Score = 33.1 bits (72), Expect = 0.48
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 660 IAAKMMQIMGWSGG-GLGVDEQGISEPIKPNLQMVKRA 770
IA+KMM MG+ G GLGV QGI PI + KR+
Sbjct: 303 IASKMMASMGYREGMGLGVSGQGILNPILVKVLPAKRS 340
>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 391
Score = 32.7 bits (71), Expect = 0.64
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 609 VSGPSEDTVFGTAIESSIAAKMMQIMGW-SGGGLGVDEQGISEPIK-PNLQMVKRAGL 776
++ P + + S A K+M+ MGW G GLG D+QGI ++ N Q GL
Sbjct: 1 MAAPEAPVKYVGICKDSAAFKLMKSMGWEEGEGLGKDKQGIKGYVRVTNKQDTSGVGL 58
>At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / D111/G-patch
domain-containing protein contains Pfam profiles
PF01585: G-patch domain, PF01805: Surp module
Length = 443
Score = 31.1 bits (67), Expect = 2.0
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 657 SIAAKMMQIMGWSGG-GLGVDEQGISEPIKPNLQMVKRAGLGSNVKG 794
++ K++ MGW G G+G +G+++PI G+G++ G
Sbjct: 362 NVGHKLLSKMGWKEGEGIGSSRKGMADPIMAGDVKTNNLGVGASAPG 408
>At5g08535.2 68418.m01015 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain; contains
a 2nt micro-exon, as identified using GeneSeqer.
Length = 116
Score = 30.7 bits (66), Expect = 2.6
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +3
Query: 654 SSIAAKMMQIMGWSGG-GLGVDEQGISEPIKPNLQMVKRAGLGS 782
S+I ++++ GW G GLG+ EQGI P++ + KR G+G+
Sbjct: 17 SNIGFQLLKKHGWKEGTGLGIAEQGILVPLQAEPKHNKR-GVGA 59
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 29.1 bits (62), Expect = 7.9
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +3
Query: 477 GDTKLEARSAVETVAWNRLSESMVSVVVKEQWIAHGDSRISVRDVSGPSEDTVFGTAIES 656
GDT + S VE +W + S +V W HG S + ED+V+G E+
Sbjct: 790 GDT---SASNVEASSWEKQGASTSNVADLGSWGTHGGSSGGNKQ----DEDSVWGKLCEA 842
Query: 657 SIAAKMMQIMGW--SGGGLGVDEQG 725
S +++ + W GG G G
Sbjct: 843 SESSQKKEESSWGKKGGSDGESSWG 867
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,434,676
Number of Sequences: 28952
Number of extensions: 469455
Number of successful extensions: 1370
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3980738496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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