Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_H10_e464_16.seq
(1512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 237 4e-63
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 237 4e-63
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 237 4e-63
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 4e-04
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 1.7
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 29 2.2
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 237 bits (579), Expect = 4e-63
Identities = 108/158 (68%), Positives = 131/158 (82%)
Frame = +3
Query: 132 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 311
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 312 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 491
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 492 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 605
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKK V
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVV 157
Score = 145 bits (352), Expect = 1e-35
Identities = 61/80 (76%), Positives = 73/80 (91%)
Frame = +1
Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774
KKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGG
Sbjct: 154 KKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGG 213
Query: 775 NHQHIGKASTVKRGTSAGRK 834
NHQH+G ++TV R ++ G+K
Sbjct: 214 NHQHVGHSTTVPRQSAPGQK 233
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 237 bits (579), Expect = 4e-63
Identities = 108/158 (68%), Positives = 131/158 (82%)
Frame = +3
Query: 132 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 311
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 312 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 491
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 492 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 605
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKK V
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVV 157
Score = 145 bits (352), Expect = 1e-35
Identities = 61/80 (76%), Positives = 73/80 (91%)
Frame = +1
Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774
KKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGG
Sbjct: 154 KKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGG 213
Query: 775 NHQHIGKASTVKRGTSAGRK 834
NHQH+G ++TV R ++ G+K
Sbjct: 214 NHQHVGHSTTVPRQSAPGQK 233
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 237 bits (579), Expect = 4e-63
Identities = 108/158 (68%), Positives = 131/158 (82%)
Frame = +3
Query: 132 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 311
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 312 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 491
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 492 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 605
GDRG L R+SGN+ ++GH+ D +TRVKLPSGAKK V
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVV 157
Score = 145 bits (352), Expect = 1e-35
Identities = 61/80 (76%), Positives = 73/80 (91%)
Frame = +1
Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774
KKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGG
Sbjct: 154 KKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGG 213
Query: 775 NHQHIGKASTVKRGTSAGRK 834
NHQH+G ++TV R ++ G+K
Sbjct: 214 NHQHVGHSTTVPRQSAPGQK 233
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 4e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +1
Query: 721 PYVRGVAMNPVEHPHGGGNHQHIG 792
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 1.7
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = -1
Query: 885 SLTTTDSSCSTRSNETXLATSRGSSLDSRSFTNMLMV---TTTMRMLNGVHSNTTYIWPA 715
SLT++ S S+ +N T A+ SSL S S T+ + TT+ + + ++++ +
Sbjct: 84 SLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSS 143
Query: 714 VAFHFVFVIST--PSLQDGLVNTTTTRDNTNHAS 619
+ + ST SL N+TT+ T+ A+
Sbjct: 144 ITSSSLASSSTTSSSLASSSTNSTTSATPTSSAT 177
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +1
Query: 589 VPKKVLPS-SNRGMVGIVAGGGR---IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 747
V K V P S +VA G ++KPI K+K K +CW +RG N
Sbjct: 42 VKKYVAPGFSQLNWSKLVASGQNLSGVEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,625,206
Number of Sequences: 5004
Number of extensions: 92724
Number of successful extensions: 244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 846388298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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