Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H10_e464_16.seq
         (1512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      242   6e-64
06_01_0552 - 3935804-3936145,3936247-3936346,3936600-3936725,393...    32   1.4  
02_02_0488 - 10863248-10863960,10865933-10866269                       31   2.4  
11_02_0150 - 8816714-8817806,8817993-8818126                           29   7.3  
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    29   7.3  
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532...    29   7.3  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  242 bits (592), Expect = 6e-64
 Identities = 108/158 (68%), Positives = 132/158 (83%)
 Frame = +3

Query: 132 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 311
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 312 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 491
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHV 120

Query: 492 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 605
           GDRG  ARASG++A VI HNPD   +R+KLPSGAKK V
Sbjct: 121 GDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIV 158



 Score =  142 bits (344), Expect = 7e-34
 Identities = 61/80 (76%), Positives = 69/80 (86%)
 Frame = +1

Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774
           KK++PSS R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGG
Sbjct: 155 KKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGG 214

Query: 775 NHQHIGKASTVKRGTSAGRK 834
           NHQHIG ASTV+R    G+K
Sbjct: 215 NHQHIGHASTVRRDAPPGQK 234


>06_01_0552 -
           3935804-3936145,3936247-3936346,3936600-3936725,
           3936802-3936991,3937105-3937338,3937640-3937788,
           3937890-3938073,3938159-3938195,3938293-3938508
          Length = 525

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -1

Query: 834 LATSRGSSLDSRSFTNMLMVTTTMRMLNGVHSNTTYIWPAVAFHFVFVISTPSLQDGLVN 655
           L  + G   D+  FT ++ V T   +LN V  +   + P V  H +  I  PS  DG+V+
Sbjct: 236 LVLAPGGFFDAGWFTEVI-VKTRPNLLNVVTHHIYNLGPGVDTHLIEKILNPSYLDGMVS 294

Query: 654 T 652
           T
Sbjct: 295 T 295


>02_02_0488 - 10863248-10863960,10865933-10866269
          Length = 349

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 650 PPPATIPTMPLLLDGNTFFGTRWKLYSR 567
           PPP+T P +   L   T+ G  WKLYSR
Sbjct: 234 PPPSTAPAVAAPL-APTYLGRPWKLYSR 260


>11_02_0150 - 8816714-8817806,8817993-8818126
          Length = 408

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 787 YVDGYHHHEDAQRGS*QHHVHMASSCVSLCIC 692
           + D YH   D  R   + HVHM S C+    C
Sbjct: 69  HTDAYHGDPDNPRTEARQHVHMLSKCLPCYSC 100


>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 582 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 463
           E  L  V+ PD  +  W+ C RR   ++   S +P  +QL
Sbjct: 431 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 470


>11_01_0657 +
           5322295-5323367,5323436-5323555,5323743-5323791,
           5323968-5324084,5324200-5324268,5324394-5324488,
           5325183-5325521,5327043-5327084,5327814-5327907,
           5328121-5328190,5328719-5329677
          Length = 1008

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 582 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 463
           E  L  V+ PD  +  W+ C RR   ++   S +P  +QL
Sbjct: 441 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,723,945
Number of Sequences: 37544
Number of extensions: 744589
Number of successful extensions: 1878
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4849681144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)