Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_H10_e464_16.seq
(1512 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 267 1e-71
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 197 2e-50
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 49 8e-06
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0) 31 1.8
SB_57183| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08) 31 3.2
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.2
SB_42924| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 267 bits (655), Expect = 1e-71
Identities = 121/158 (76%), Positives = 137/158 (86%)
Frame = +3
Query: 132 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 311
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 312 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 491
V FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKT 120
Query: 492 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 605
GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KK +
Sbjct: 121 GDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVI 158
Score = 157 bits (382), Expect = 2e-38
Identities = 69/80 (86%), Positives = 73/80 (91%)
Frame = +1
Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774
KKV+PSSNR +VGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGG
Sbjct: 155 KKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGG 214
Query: 775 NHQHIGKASTVKRGTSAGRK 834
NHQHIG STV+R T AGRK
Sbjct: 215 NHQHIGHPSTVRRDTPAGRK 234
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 197 bits (481), Expect = 2e-50
Identities = 87/116 (75%), Positives = 102/116 (87%)
Frame = +3
Query: 258 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVM 437
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L++GN +
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60
Query: 438 PVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 605
PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN + KRTRVKLPSG KK +
Sbjct: 61 PVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNVEKKRTRVKLPSGIKKVI 116
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 49.2 bits (112), Expect = 8e-06
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Frame = +3
Query: 252 IKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYC--GKK---AT 416
IK V + +DP R A +A+V +++L IAP+ + G + GK A
Sbjct: 56 IKDKVLQVGYDPCRSARIALVAGNG----SNQEKLVIAPDEIQVGDVMTASRGKPESLAL 111
Query: 417 LEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 596
L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS +
Sbjct: 112 LKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSKVE 169
Query: 597 KSVTIK 614
K V+ K
Sbjct: 170 KEVSSK 175
>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 687
Score = 31.5 bits (68), Expect = 1.8
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = -1
Query: 936 LNKFIYLKICLCFFLXVSLTTTDSSCSTRSNETXLATSRGSSLDSRSFT--NMLMVTTTM 763
L+ Y+K C S +T SS ST S+ + +TS SSL S SFT N+++V +
Sbjct: 210 LSFLCYVKCCSA---SASSSTASSSLSTSSSSS--STSSSSSLTSSSFTNINIIIVNIII 264
Query: 762 RMLNGV 745
++N +
Sbjct: 265 IIINNI 270
>SB_57183| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)
Length = 533
Score = 30.7 bits (66), Expect = 3.2
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = -1
Query: 939 NLNKFIYLKICLCFFLXVSLTTTDSSCSTRSNETXLATSRGSSLDSRSFT 790
NL + + + L +FL +S+T T+ SC S+ T ++S ++++SR+ T
Sbjct: 261 NLKPYFFAVMKLLYFLILSITVTNPSC---SSTTTPSSSTYTTVESRATT 307
>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 30.7 bits (66), Expect = 3.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 884 VLPPRILPVLRAAMRPXLRPAEVPLLTVEALPIC*WLPPP 765
VL P + P+LR +RP LRP P+L L W PP
Sbjct: 412 VLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450
>SB_42924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 29.5 bits (63), Expect = 7.4
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 104 GRFRKNTYAXCRIXCSPGXXH*XLERPPPR 15
G+FR N + CSPG LERPPPR
Sbjct: 4 GQFRYNNTSFTSNSCSPGDPL-VLERPPPR 32
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,792,114
Number of Sequences: 59808
Number of extensions: 785398
Number of successful extensions: 2099
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2076
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4906390786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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