BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030905E5_H10_e464_16.seq (1512 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 246 2e-65 At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 241 6e-64 At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 236 2e-62 At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 7e-05 At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 46 9e-05 At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 46 9e-05 At4g35110.2 68417.m04989 expressed protein 30 4.6 At4g35110.1 68417.m04988 expressed protein 30 4.6 >At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) Length = 258 Score = 246 bits (603), Expect = 2e-65 Identities = 112/158 (70%), Positives = 134/158 (84%) Frame = +3 Query: 132 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 311 MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60 Query: 312 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 491 V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E + Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120 Query: 492 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 605 GDRG LARASG++A VI HNPD+ TR+KLPSG+KK V Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIV 158 Score = 136 bits (330), Expect = 3e-32 Identities = 59/80 (73%), Positives = 67/80 (83%) Frame = +1 Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774 KK++PS R M+G VAGGGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGG Sbjct: 155 KKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGG 214 Query: 775 NHQHIGKASTVKRGTSAGRK 834 NHQHIG ASTV+R G+K Sbjct: 215 NHQHIGHASTVRRDAPPGQK 234 >At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8 Length = 258 Score = 241 bits (591), Expect = 6e-64 Identities = 109/158 (68%), Positives = 132/158 (83%) Frame = +3 Query: 132 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 311 MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60 Query: 312 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 491 V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E + Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120 Query: 492 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 605 GDRG ARASG++A VI HNPD +R+KLPSG+KK V Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIV 158 Score = 141 bits (341), Expect = 1e-33 Identities = 60/80 (75%), Positives = 68/80 (85%) Frame = +1 Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774 KK++PS R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGG Sbjct: 155 KKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGG 214 Query: 775 NHQHIGKASTVKRGTSAGRK 834 NHQHIG ASTV+R G+K Sbjct: 215 NHQHIGHASTVRRDAPPGKK 234 >At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582 Length = 260 Score = 236 bits (578), Expect = 2e-62 Identities = 107/157 (68%), Positives = 132/157 (84%), Gaps = 1/157 (0%) Frame = +3 Query: 132 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 308 MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60 Query: 309 VVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEK 488 V FR P+++ +KELF+A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120 Query: 489 MGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKK 599 +GDRG LARASG++A VI HNP++ TRVKLPSG+KK Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKK 157 Score = 144 bits (350), Expect = 1e-34 Identities = 63/80 (78%), Positives = 68/80 (85%) Frame = +1 Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774 KK+LPS+ R M+G VAGGGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGG Sbjct: 156 KKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGG 215 Query: 775 NHQHIGKASTVKRGTSAGRK 834 NHQHIG ASTV+R SAG K Sbjct: 216 NHQHIGHASTVRRDKSAGAK 235 >At4g14250.1 68417.m02198 UBX domain-containing protein low similarity to 60S ribosomal protein L2 [Nicotiana tabacum] GI:9230281; contains Pfam profile PF00789: UBX domain Length = 724 Score = 46.0 bits (104), Expect = 7e-05 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Frame = +1 Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAM-NPVEHPHGG 771 KK + S R M+G +A G + K K +KRN W VRGVAM NPVEHPHGG Sbjct: 389 KKTVLSGCRVMIGQIASSG-----LTK------KLMIKRNMWAKVRGVAMMNPVEHPHGG 437 >At2g44065.2 68415.m05480 ribosomal protein L2 family protein similar to ribosomal protein L2 [Gossypium arboreum] GI:17644114; contains Pfam profile PF03947: Ribosomal Proteins L2, C-terminal domain Length = 214 Score = 45.6 bits (103), Expect = 9e-05 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = +3 Query: 423 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKS 602 +G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117 Query: 603 VTIK 614 + K Sbjct: 118 INAK 121 Score = 41.5 bits (93), Expect = 0.001 Identities = 23/52 (44%), Positives = 31/52 (59%) Frame = +1 Query: 619 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774 R +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG Sbjct: 123 RATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169 >At2g44065.1 68415.m05479 ribosomal protein L2 family protein similar to ribosomal protein L2 [Gossypium arboreum] GI:17644114; contains Pfam profile PF03947: Ribosomal Proteins L2, C-terminal domain Length = 214 Score = 45.6 bits (103), Expect = 9e-05 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = +3 Query: 423 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKS 602 +G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117 Query: 603 VTIK 614 + K Sbjct: 118 INAK 121 Score = 41.5 bits (93), Expect = 0.001 Identities = 23/52 (44%), Positives = 31/52 (59%) Frame = +1 Query: 619 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774 R +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG Sbjct: 123 RATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169 >At4g35110.2 68417.m04989 expressed protein Length = 386 Score = 29.9 bits (64), Expect = 4.6 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = -3 Query: 739 QHHVHMASSCVSLCICDKHAQPSR-WACQYDHHPRQYQPCLCCLMVTLFLAPDGSFTRVR 563 ++ V SS + + +KH ++ + D +Y CLC LM L P G ++V+ Sbjct: 216 KYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLSKVK 275 Query: 562 L 560 + Sbjct: 276 V 276 >At4g35110.1 68417.m04988 expressed protein Length = 386 Score = 29.9 bits (64), Expect = 4.6 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = -3 Query: 739 QHHVHMASSCVSLCICDKHAQPSR-WACQYDHHPRQYQPCLCCLMVTLFLAPDGSFTRVR 563 ++ V SS + + +KH ++ + D +Y CLC LM L P G ++V+ Sbjct: 216 KYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLSKVK 275 Query: 562 L 560 + Sbjct: 276 V 276 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,665,475 Number of Sequences: 28952 Number of extensions: 541896 Number of successful extensions: 1313 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1219 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1311 length of database: 12,070,560 effective HSP length: 84 effective length of database: 9,638,592 effective search space used: 4038570048 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -