Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H10_e464_16.seq
         (1512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             246   2e-65
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   241   6e-64
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   236   2e-62
At4g14250.1 68417.m02198 UBX domain-containing protein low simil...    46   7e-05
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    46   9e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    46   9e-05
At4g35110.2 68417.m04989 expressed protein                             30   4.6  
At4g35110.1 68417.m04988 expressed protein                             30   4.6  

>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  246 bits (603), Expect = 2e-65
 Identities = 112/158 (70%), Positives = 134/158 (84%)
 Frame = +3

Query: 132 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 311
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 312 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 491
           V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E  +
Sbjct: 61  VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHV 120

Query: 492 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 605
           GDRG LARASG++A VI HNPD+  TR+KLPSG+KK V
Sbjct: 121 GDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKKIV 158



 Score =  136 bits (330), Expect = 3e-32
 Identities = 59/80 (73%), Positives = 67/80 (83%)
 Frame = +1

Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774
           KK++PS  R M+G VAGGGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGG
Sbjct: 155 KKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGG 214

Query: 775 NHQHIGKASTVKRGTSAGRK 834
           NHQHIG ASTV+R    G+K
Sbjct: 215 NHQHIGHASTVRRDAPPGQK 234


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  241 bits (591), Expect = 6e-64
 Identities = 109/158 (68%), Positives = 132/158 (83%)
 Frame = +3

Query: 132 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 311
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 312 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 491
           V FR P++FK +KELF+A EG+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E  +
Sbjct: 61  VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHV 120

Query: 492 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKSV 605
           GDRG  ARASG++A VI HNPD   +R+KLPSG+KK V
Sbjct: 121 GDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIV 158



 Score =  141 bits (341), Expect = 1e-33
 Identities = 60/80 (75%), Positives = 68/80 (85%)
 Frame = +1

Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774
           KK++PS  R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGG
Sbjct: 155 KKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGG 214

Query: 775 NHQHIGKASTVKRGTSAGRK 834
           NHQHIG ASTV+R    G+K
Sbjct: 215 NHQHIGHASTVRRDAPPGKK 234


>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  236 bits (578), Expect = 2e-62
 Identities = 107/157 (68%), Positives = 132/157 (84%), Gaps = 1/157 (0%)
 Frame = +3

Query: 132 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 308
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 309 VVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEK 488
            V FR P+++  +KELF+A EG+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E  
Sbjct: 61  RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELH 120

Query: 489 MGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKK 599
           +GDRG LARASG++A VI HNP++  TRVKLPSG+KK
Sbjct: 121 VGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKK 157



 Score =  144 bits (350), Expect = 1e-34
 Identities = 63/80 (78%), Positives = 68/80 (85%)
 Frame = +1

Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774
           KK+LPS+ R M+G VAGGGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGG
Sbjct: 156 KKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGG 215

Query: 775 NHQHIGKASTVKRGTSAGRK 834
           NHQHIG ASTV+R  SAG K
Sbjct: 216 NHQHIGHASTVRRDKSAGAK 235


>At4g14250.1 68417.m02198 UBX domain-containing protein low
           similarity to 60S ribosomal protein L2 [Nicotiana
           tabacum] GI:9230281; contains Pfam profile PF00789: UBX
           domain
          Length = 724

 Score = 46.0 bits (104), Expect = 7e-05
 Identities = 29/60 (48%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +1

Query: 595 KKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAM-NPVEHPHGG 771
           KK + S  R M+G +A  G     + K      K  +KRN W  VRGVAM NPVEHPHGG
Sbjct: 389 KKTVLSGCRVMIGQIASSG-----LTK------KLMIKRNMWAKVRGVAMMNPVEHPHGG 437


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 23/64 (35%), Positives = 36/64 (56%)
 Frame = +3

Query: 423 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKS 602
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 603 VTIK 614
           +  K
Sbjct: 118 INAK 121



 Score = 41.5 bits (93), Expect = 0.001
 Identities = 23/52 (44%), Positives = 31/52 (59%)
 Frame = +1

Query: 619 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774
           R  +G V+      K + KAG++  ++   R   P VRGVAMNP +HPHGGG
Sbjct: 123 RATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 23/64 (35%), Positives = 36/64 (56%)
 Frame = +3

Query: 423 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKS 602
           +G+ MP+G M  GTI+ N+E   G   ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 603 VTIK 614
           +  K
Sbjct: 118 INAK 121



 Score = 41.5 bits (93), Expect = 0.001
 Identities = 23/52 (44%), Positives = 31/52 (59%)
 Frame = +1

Query: 619 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 774
           R  +G V+      K + KAG++  ++   R   P VRGVAMNP +HPHGGG
Sbjct: 123 RATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169


>At4g35110.2 68417.m04989 expressed protein
          Length = 386

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 739 QHHVHMASSCVSLCICDKHAQPSR-WACQYDHHPRQYQPCLCCLMVTLFLAPDGSFTRVR 563
           ++ V   SS +   + +KH   ++    + D    +Y  CLC LM  L   P G  ++V+
Sbjct: 216 KYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLSKVK 275

Query: 562 L 560
           +
Sbjct: 276 V 276


>At4g35110.1 68417.m04988 expressed protein
          Length = 386

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 739 QHHVHMASSCVSLCICDKHAQPSR-WACQYDHHPRQYQPCLCCLMVTLFLAPDGSFTRVR 563
           ++ V   SS +   + +KH   ++    + D    +Y  CLC LM  L   P G  ++V+
Sbjct: 216 KYRVRSGSSTILSAVIEKHGDIAQNCKLESDSMRSRYLECLCSLMQELRSTPVGQLSKVK 275

Query: 562 L 560
           +
Sbjct: 276 V 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,665,475
Number of Sequences: 28952
Number of extensions: 541896
Number of successful extensions: 1313
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4038570048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)