Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H07_e440_15.seq
         (1517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    30   0.96 
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    28   3.9  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   6.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   9.0  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 400 SLKNGVATKILETGTDASATNDDTTEV-YFSAKDGIYVFDAKT 525
           +LK GV    ++TG+ ASATN    E+ Y    +   VFD  T
Sbjct: 254 TLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKNT 296


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 830 SLKMERYTRLMTSLYHLRDRTSETTDFILQEKPSAYAP 943
           SL +E+Y + M  +  L D   ++    LQ KPS+  P
Sbjct: 572 SLSLEQYNKCMREIRSLSDAVQKSHAKKLQSKPSSVVP 609


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 212 NSSDDTMSFSSLFSVTGAAFINPIKN 135
           N S  T SFS  FS TG   + PI+N
Sbjct: 193 NESFQTPSFSGSFSQTGTYQLTPIRN 218


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 578 LTIPIKLSVFVPYFSVL 528
           LTIP++LS+ +PY S L
Sbjct: 772 LTIPVRLSLLLPYMSYL 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,629,094
Number of Sequences: 5004
Number of extensions: 86148
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 850352646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)