Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H07_e440_15.seq
         (1517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0286 + 7100342-7100504,7100613-7100719,7102109-7102240,710...    31   1.8  
07_01_0808 - 6326767-6327788,6328270-6328459                           31   3.2  
01_07_0082 - 40965947-40967023                                         30   4.2  
02_04_0607 - 24302582-24303075,24303150-24304197                       30   5.5  
01_01_0715 - 5542648-5543219,5543352-5543544                           30   5.5  
09_04_0523 + 18310695-18311837,18312050-18312109,18312232-183123...    29   7.3  
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671     29   7.3  
06_01_0866 + 6582131-6583294                                           29   9.7  

>03_02_0286 +
           7100342-7100504,7100613-7100719,7102109-7102240,
           7102383-7102539,7103099-7103220
          Length = 226

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 598 LYVLTENHDVYKVSDGGNKNEKLEDVKDAQEIVLDYSNNLYFY 726
           L  +T+  +V +    GN  E +E + D    +LD +  LYF+
Sbjct: 59  LATITDRMEVKRAVQSGNVQEAIEKINDLNPTILDTNPQLYFH 101


>07_01_0808 - 6326767-6327788,6328270-6328459
          Length = 403

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 818 SHHLSLKMERYTRLMTSLYHLRDRTSETTDFILQEKPSAYAPEAPXI 958
           S HL+   ER+ R+  S   +R R +  T+ ILQE PS     AP +
Sbjct: 50  SEHLTNLKERFQRMCESS-QIRKRYTHLTEEILQENPSMCVFTAPSL 95


>01_07_0082 - 40965947-40967023
          Length = 358

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -2

Query: 1438 PPRGXPPPPXXXPXGRXXXXXXXXKVPXPXSXKPPPG 1328
            PP+   PPP   P             P P S  PPPG
Sbjct: 171  PPQSTYPPPTAYPTAAKADGSAAAAYP-PQSAYPPPG 206


>02_04_0607 - 24302582-24303075,24303150-24304197
          Length = 513

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 23/88 (26%), Positives = 30/88 (34%)
 Frame = +1

Query: 916  SGETECVRS*SPAHPXYXXTXKITNXXPAXXXGXVLPXXDLCIXGSXXSXTRXERTXXNX 1095
            +G  + V + +P       +  +    PA   G      D        S  R +    N 
Sbjct: 123  NGWAQFVFAVAPPRTRSASSSPLWGLCPACDSGTSRDMADTAWEVPAGSSERMQAVRLNP 182

Query: 1096 VVXGFKGAVXXSNKKKXXPGGXPXPLXG 1179
            VV     AV  S KK   PG  P PL G
Sbjct: 183  VVAAAAAAVSASTKK-WLPGSIPSPLRG 209


>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = -2

Query: 1435 PRGXPPPPXXXPXGRXXXXXXXXKVPXPXSXKPPP 1331
            PR  PPPP     G           P P    PPP
Sbjct: 157  PRPSPPPPAAGTNGTARAPSPPVPAPAPAGSPPPP 191


>09_04_0523 +
           18310695-18311837,18312050-18312109,18312232-18312324,
           18312675-18312731,18313321-18313359
          Length = 463

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 837 RWSGIRG**QVYIIYVTGXVRRPILFFRRNRVRTLLKPRXSXL 965
           +W GI    Q  ++++    RRP+ FF+R  +  LL P  + L
Sbjct: 46  QWDGIIRDPQFAMVHIQRAPRRPLFFFQRENLVHLLYPSEAIL 88


>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
          Length = 502

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 116 CELHXWYXC*TXPRA-EXPAXPGXXH*XLERPPP 18
           C+L  +  C T P   E P  PG     LERPPP
Sbjct: 57  CDLTLYTCCATAPLTLEHPLLPGRHFRLLERPPP 90


>06_01_0866 + 6582131-6583294
          Length = 387

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 1381 WXTPXXWAXXXGGGAPPXXGG 1443
            W  P   A   GGGAPP  GG
Sbjct: 250  WMVPSSNAQAAGGGAPPGGGG 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,519,388
Number of Sequences: 37544
Number of extensions: 665055
Number of successful extensions: 1700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4872885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)