Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_H07_e440_15.seq
(1517 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45619| Best HMM Match : M (HMM E-Value=0.01) 37 0.037
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 36 0.11
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 34 0.26
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.2
SB_3800| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.4
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 29 9.8
>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
Length = 1315
Score = 37.1 bits (82), Expect = 0.037
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Frame = +1
Query: 409 NGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVK 579
N A +++++ +DA +N D V S D I V D+ +++ +N+D I ++
Sbjct: 1197 NSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSDAIRVMDSNSDEIRAMDSNSDE-IRVMD 1255
Query: 580 TNGSDVLYVLTENHDVYKVSDGGNKNEKLED 672
+N SD + V+ N D +V D + ++ D
Sbjct: 1256 SN-SDAIRVMDSNSDAIRVMDSYSDEIRVMD 1285
Score = 34.7 bits (76), Expect = 0.20
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Frame = +1
Query: 346 FVEADVNDKGEKEYKGLYSLKNGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFD 516
FV E + +YS N + + + +DA +N D V S D I V D
Sbjct: 1128 FVTKATKVSNSNEIREMYS--NSDEMREMYSNSDAIRVMDSNSDAIRVMDSNSDAIRVMD 1185
Query: 517 AKTNKTEKYGTNTDSLIGIVKTNGSDVLYVLTENHDVYKVSDGGNKNEKLEDVKDAQEIV 696
+ +++ +N+D+ I ++ +N SD + V+ N D +V D + ++ D ++ EI
Sbjct: 1186 SNSDEIRVMDSNSDA-IRVMDSN-SDAIRVMDSNSDAIRVMDSNSDAIRVMD-SNSDEIR 1242
Query: 697 LDYSNN 714
SN+
Sbjct: 1243 AMDSNS 1248
Score = 29.1 bits (62), Expect = 9.8
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +1
Query: 361 VNDKGEKEYKGLYSLKNGVATKILETGTDASA---TNDDTTEVYFSAKDGIYVFDAKTNK 531
V D E + + S N +++++ +DA +N D V S D I V D+ ++
Sbjct: 1233 VMDSNSDEIRAMDS--NSDEIRVMDSNSDAIRVMDSNSDAIRVMDSYSDEIRVMDSNSDA 1290
Query: 532 TEKYGTNTDSLIGIVKTNGSDV 597
G+N+D+ I ++ +N ++
Sbjct: 1291 IRVMGSNSDA-IRVMDSNSDEI 1311
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 35.5 bits (78), Expect = 0.11
Identities = 27/94 (28%), Positives = 39/94 (41%)
Frame = +1
Query: 421 TKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIGIVKTNGSDVL 600
TK T D A+NDD ++ Y S D FD ++ + +D V SD
Sbjct: 24 TKASHTEYDGDASNDDASDDYVSGDDNASSFDDVSDGSSDGDDVSDG--DDVSNGSSDGD 81
Query: 601 YVLTENHDVYKVSDGGNKNEKLEDVKDAQEIVLD 702
V + D VSDG N + + D D + +D
Sbjct: 82 DVSDGSSDGDDVSDGSNDGDDVSDGDDVSDGSID 115
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 34.3 bits (75), Expect = 0.26
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = -3
Query: 1431 GGXPPPXPXRPXXGGXPXXGGPKFXGXXVXSPPPGFXG 1318
GG PPP P P GG P G PPPGF G
Sbjct: 673 GGAPPPPPP-PLPGGAAPPPPPPIGGGAPPPPPPGFGG 709
Score = 29.1 bits (62), Expect = 9.8
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -2
Query: 1438 PPRGXPPPPXXXPXGRXXXXXXXXKVPXPXSXKPPP 1331
P G PPPP P G+ P P PPP
Sbjct: 656 PEAGPPPPPPPPPGGQAGGAPPPPPPPLPGGAAPPP 691
>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1215
Score = 30.3 bits (65), Expect = 4.2
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 544 GTNTDSLIGIVKTNGSDVLYVLT-ENHDVYKVSDGGNKNEKLEDVKDAQEIVLDYSNNLY 720
G D L+ ++K +G +++ VLT +N+D D GN ++ L D DA +L+ + Y
Sbjct: 572 GKLKDVLVTLMKVSGEEIVKVLTNDNND--DDGDDGNDSDFLTDTFDALFAILNENARKY 629
>SB_3800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 29.5 bits (63), Expect = 7.4
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 4/125 (3%)
Frame = +1
Query: 400 SLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKT--EKY-GTNTDSLIG 570
S +G ++ + +T+ T E+ D +FD ++NKT +Y D L
Sbjct: 7 SAVSGTSSSEPQEKPSTESTDSTTAELQKKISDAFDIFDHESNKTVDVRYKPAPEDQLSK 66
Query: 571 IVKTNGSDVL-YVLTENHDVYKVSDGGNKNEKLEDVKDAQEIVLDYSNNLYFYGKDKAPY 747
+ D Y+ TE Y +G + E+V++ +D + FY KD
Sbjct: 67 AFEVLDQDKKGYLTTEELTKYMTEEGEAFTQ--EEVEEMLSAAVDPEKGVIFY-KDFVAM 123
Query: 748 VVTED 762
+V ED
Sbjct: 124 MVVED 128
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 29.1 bits (62), Expect = 9.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +1
Query: 412 GVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTEKYGTNTDSLIG 570
G+ + +++A D ++ YF AKD IY F K E + ++ G
Sbjct: 84 GIVFVSINNTNESNAAVDVSSGPYFPAKDRIYSFQLKGKSKEPFSLTIQTVTG 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,810,650
Number of Sequences: 59808
Number of extensions: 675647
Number of successful extensions: 3024
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3000
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4929866340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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