Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H06_e432_16.seq
         (1457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.8  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    27   8.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
 Frame = -1

Query: 893 GAPP-KNXXXXGEKXPPPPPEXXXPXGXXPXPXPGK 789
           G PP  N        PPPPP      G  P P  G+
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR 358


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +3

Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPP 1178
            P P  G   PPP PP   GA       G PPPP
Sbjct: 754  PAPIMGGPPPPPPPPGVAGA-------GPPPPP 779


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 461 WNRCQFPSLTTKGCGSGEKTPSAW 532
           W R  F S TT    SG++TPS++
Sbjct: 195 WRRNGFRSKTTPNLNSGKETPSSY 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,984,865
Number of Sequences: 5004
Number of extensions: 65289
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 814742980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)