Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H06_e432_16.seq
         (1457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 31   1.7  
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 31   2.3  
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.3  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    29   7.0  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_4166| Best HMM Match : RVT_1 (HMM E-Value=0.00088)                  29   7.0  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   29   9.3  

>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 17/37 (45%), Positives = 17/37 (45%)
 Frame = +3

Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPPXFXG 1190
            PPP  G   PPP PP   GA         PPPP F G
Sbjct: 680  PPPLPGGAAPPPPPPIGGGA-------PPPPPPGFGG 709



 Score = 29.5 bits (63), Expect = 7.0
 Identities = 18/55 (32%), Positives = 19/55 (34%)
 Frame = -1

Query: 887 PPKNXXXXGEKXPPPPPEXXXPXGXXPXPXPGKXRGXKXXPGXGGTXFXKIXXNR 723
           PP      G   PPPPP    P G  P P P    G    P  G   F  +   R
Sbjct: 665 PPPPGGQAGGAPPPPPPP--LPGGAAPPPPPPIGGGAPPPPPPGFGGFANLVKPR 717


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 510 GKKPHPLGTGGXIPKERGXEXPPKSLKG 593
           G++P P G G  +P E G E PP+  +G
Sbjct: 499 GEEPPPEGEGDDLPPEEGGEVPPEGEEG 526


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 29.9 bits (64), Expect = 5.3
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 479 PSLTTKGCGSGEKTPSAWDWGKXTQRKGLRXPAQKPKGPG 598
           P  +  G G+G K P     G  T RKG   P   P GPG
Sbjct: 783 PGTSPDGPGTGRKGPGTSPGGPGTGRKG---PGTSPDGPG 819



 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 479 PSLTTKGCGSGEKTPSAWDWGKXTQRKGLRXPAQKPKGPG 598
           P+  + G G+G K P     G  T RKG   P   P GPG
Sbjct: 713 PATNSHGPGNGRKGPGTSPDGPGTGRKG---PRTSPDGPG 749


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -1

Query: 857 KXPPPPPEXXXPXGXXPXPXPGKXRGXKXXPGXGG 753
           + PPPPP    P G    P P    G K  PG  G
Sbjct: 36  EAPPPPPGPPGPDGPPGFPGPQGPNGPKGPPGLPG 70


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = +3

Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPPXFXGPXWGL 1205
            PPP  G   PPP      G        G  PPP   G  WGL
Sbjct: 570  PPPGAGQGGPPPPGAGQEGPPPPGAGQGGGPPPPGAGQGWGL 611


>SB_4166| Best HMM Match : RVT_1 (HMM E-Value=0.00088)
          Length = 271

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 389 YLYLNKFKLQSKRCHRLHSDCLPSWNRCQFPSLTTKG 499
           + + N  KL+  +C  +  D L  +N C +P +TT G
Sbjct: 219 FAFSNNMKLKPAKCKSMSIDFL-DYNSCTYPPITTDG 254


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +3

Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPPXFXG 1190
            PPP +    PPP PP F          G PPPP   G
Sbjct: 202  PPPGFPGGAPPPPPPPF----------GAPPPPALNG 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,878,298
Number of Sequences: 59808
Number of extensions: 615712
Number of successful extensions: 1855
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4695110800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)