Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_H06_e432_16.seq
(1457 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 34 0.29
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 33 0.38
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.89
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.89
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 32 0.89
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 32 0.89
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.89
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 2.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 2.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 2.0
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 30 4.7
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 30 4.7
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 8.3
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 8.3
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 8.3
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 8.3
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 33.9 bits (74), Expect = 0.29
Identities = 26/66 (39%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +3
Query: 999 KXPPPXFFX-FXLGKXKRGFXWGX---RIFXPPPXWGFXXPPPXPPXFXGAXLXFFXGGX 1166
K PPP F F G F G F PPP G PP PP F G G
Sbjct: 741 KPPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPP-PPSFRGGR---GGHGG 796
Query: 1167 PPPPXF 1184
PPPP F
Sbjct: 797 PPPPHF 802
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical protein
T24B8.4 protein.
Length = 866
Score = 33.5 bits (73), Expect = 0.38
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +3
Query: 1074 FXPPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPPXFXG 1190
F PPP PPP P F GG PPPP G
Sbjct: 64 FIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMG 102
Score = 31.5 bits (68), Expect = 1.5
Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +3
Query: 1074 FXPPPXWGFXXPPPXPPXFXGAXLXF--FXGGXPPPPXFXG 1190
F PPP PPP PP F G GG PPPP G
Sbjct: 73 FIPPPPGPGGIPPP-PPMFAGGIPPPPPMMGGIPPPPPMFG 112
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.89
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPP 1178
PPP G PPP PP G F GG PPPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGG-----FKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.89
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPP 1178
PPP G PPP PP G F GG PPPP
Sbjct: 761 PPPPPGGCPPPPPPPPPGG-----FKGGPPPPP 788
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 32.3 bits (70), Expect = 0.89
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +3
Query: 1080 PPPXW--GFXXPPPXPPXFXGAXLXFFXGGXPPPP 1178
PPP GF PPP PP G PPPP
Sbjct: 664 PPPGGLGGFMPPPPPPPPMPGDLSSLLAAAPPPPP 698
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 32.3 bits (70), Expect = 0.89
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +3
Query: 1080 PPPXW--GFXXPPPXPPXFXGAXLXFFXGGXPPPP 1178
PPP GF PPP PP G PPPP
Sbjct: 664 PPPGGLGGFMPPPPPPPPMPGDLSSLLAAAPPPPP 698
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.89
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPP 1178
PPP G PPP PP G F GG PPPP
Sbjct: 344 PPPPPGGCPPPPPPPPPGG-----FKGGPPPPP 371
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 2.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 893 GAPPKNXXXXGEKXPPPPPEXXXPXGXXPXPXPG 792
G+PP G PPPPP P G P P G
Sbjct: 287 GSPPPPRA--GSPPPPPPPRGSPPTGSLPPPQAG 318
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 2.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 893 GAPPKNXXXXGEKXPPPPPEXXXPXGXXPXPXPG 792
G+PP G PPPPP P G P P G
Sbjct: 308 GSPPPPRA--GSPPPPPPPRGSPPTGSLPPPQAG 339
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 2.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 893 GAPPKNXXXXGEKXPPPPPEXXXPXGXXPXPXPG 792
G+PP G PPPPP P G P P G
Sbjct: 293 GSPPPPRA--GSPPPPPPPRGSPPTGSLPPPQAG 324
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = -3
Query: 903 KNXGGXPXKPXXXXGKXPPPPPGXXXSQXXXSXXXPREKXGXEXSSXXRGNXFXKNXXKP 724
K G P P G+ PP PPG S G S RG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAP 212
Query: 723 G 721
G
Sbjct: 213 G 213
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = -3
Query: 903 KNXGGXPXKPXXXXGKXPPPPPGXXXSQXXXSXXXPREKXGXEXSSXXRGNXFXKNXXKP 724
K G P P G+ PP PPG S G S RG P
Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAP 212
Query: 723 G 721
G
Sbjct: 213 G 213
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical protein
C18D11.4 protein.
Length = 309
Score = 29.5 bits (63), Expect = 6.3
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -2
Query: 1192 GPXKXGGGGXPPXKKXRXAPXKXGGXGGGXKXPHXGGG 1079
G + GGGG R + GG GGG GGG
Sbjct: 224 GGDRYGGGGGRRGSPDRRGGFRSGGGGGGYMRSGGGGG 261
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 8.3
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPP 1178
PPP G PPP PP G PPPP
Sbjct: 289 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 8.3
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPP 1178
PPP G PPP PP G PPPP
Sbjct: 299 PPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 29.1 bits (62), Expect = 8.3
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 1095 GFXXPPPXPPXFXGAXLXFFXGGXPPPPXFXGP 1193
G PPP PP GG PPPP + P
Sbjct: 30 GCGAPPP-PPACAPPPAPACGGGAPPPPAYAAP 61
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = -1
Query: 887 PPKNXXXXGEKXPPPPPEXXXPXGXXPXPXPGKXRGXKXXPGXGG 753
PP G++ PP P P G P P P G PG G
Sbjct: 183 PPGQPGQPGQRGPPGEPGALLPGGDAP-PGPSGPPGRPGAPGQPG 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,614,261
Number of Sequences: 27780
Number of extensions: 526920
Number of successful extensions: 2219
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1995
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4173077878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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