Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_H06_e432_16.seq
(1457 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 34 0.27
At4g08370.1 68417.m01382 proline-rich extensin-like family prote... 32 1.1
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 31 1.4
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin... 31 2.5
At2g36710.1 68415.m04504 pectinesterase family protein contains ... 30 4.4
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 30 4.4
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 30 4.4
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 29 5.8
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 5.8
At1g26240.1 68414.m03201 proline-rich extensin-like family prote... 29 5.8
At1g15830.1 68414.m01900 expressed protein 29 5.8
At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family... 29 5.8
At5g35190.1 68418.m04170 proline-rich extensin-like family prote... 29 7.7
At1g26250.1 68414.m03202 proline-rich extensin, putative similar... 29 7.7
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 33.9 bits (74), Expect = 0.27
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -2
Query: 1219 PPXEKSPX*GPXKXGGGGXPPXK--KXRXAPXKXGGXGGGXKXPHXGGG 1079
PP K P G GG PP K P GG GGG PH GGG
Sbjct: 35 PPVPKPPQHGGGGGGGSKPPPHHGGKGGGKPPPHGGKGGGP--PHHGGG 81
>At4g08370.1 68417.m01382 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 350
Score = 31.9 bits (69), Expect = 1.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPPXF 1184
PPP + + PPP P + F PPPP +
Sbjct: 107 PPPTYIYNSPPPPPYVYKSVPRITFIYSSPPPPPY 141
Score = 30.7 bits (66), Expect = 2.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPPXF 1184
PPP + + PPP P + F PPPP +
Sbjct: 177 PPPPYVYNSPPPPPYVYESVPRIPFIYSSPPPPPY 211
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 1071 IFXPPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPP 1178
++ PPP PPP PP + PPPP
Sbjct: 424 VYSPPPSPPVFSPPPSPPVYSPPPPPSIHYSSPPPP 459
>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
protein contains Pfam heavy metal associated domain
PF00403
Length = 473
Score = 30.7 bits (66), Expect = 2.5
Identities = 22/63 (34%), Positives = 25/63 (39%)
Frame = -2
Query: 1192 GPXKXGGGGXPPXKKXRXAPXKXGGXGGGXKXPHXGGGXKIRXPXKNPLXFFPRXXKKNX 1013
GP K GG G P K G GGG K G G + + KN P+ K
Sbjct: 251 GPAKNGGKGAPAAGGGGAGGGK--GAGGGAK---GGPGNQNQGGGKNGGGGHPQDGKNGG 305
Query: 1012 GGG 1004
GGG
Sbjct: 306 GGG 308
>At2g36710.1 68415.m04504 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 407
Score = 29.9 bits (64), Expect = 4.4
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 506 SGEKTPSAWD-WGKXTQRKGLRXPAQKPKGPGGSY 607
SG TP W+ WG T+ K + K GPG Y
Sbjct: 321 SGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADY 355
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 29.9 bits (64), Expect = 4.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -1
Query: 890 APPKNXXXXGEKXPPPPPEXXXPXGXXPXPXPGK 789
+PP PPPPP P P P PGK
Sbjct: 383 SPPPPPPPSAAAPPPPPPPKKGPAAPPPPPPPGK 416
Score = 29.1 bits (62), Expect = 7.7
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = -1
Query: 887 PPKNXXXXGEKXPPPPPEXXXPXGXXPXPXPGKXRGXKXXPG 762
PP G PPPPP P P P +G PG
Sbjct: 396 PPPPPPKKGPAAPPPPPPPGKKGAGPPPPPPMSKKGPPKPPG 437
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 744
Score = 29.9 bits (64), Expect = 4.4
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPPXFXGP 1193
PPP + + PPP P + + PPP + P
Sbjct: 485 PPPPYVYSSPPPPPYVYSSPPPPYVYSSPPPPYVYSSP 522
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -1
Query: 848 PPPPEXXXPXGXXPXPXPGKXRGXKXXPGXGG 753
PPPP P G P P G PG GG
Sbjct: 38 PPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGG 69
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 29.5 bits (63), Expect = 5.8
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = -1
Query: 896 LGAPPKNXXXXGEKXPPPPPEXXXPXGXXPXPXPGKXRGXKXXP 765
LGAPP K P PPP P P PG RG P
Sbjct: 711 LGAPPPPPPPPLSKTPAPPPPPLSKT-PVPPPPPGLGRGTSSGP 753
>At1g26240.1 68414.m03201 proline-rich extensin-like family protein
similar to hydroxyproline-rich glycoprotein precursor
gi|727264|gb|AAA87902; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 478
Score = 29.5 bits (63), Expect = 5.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPPXF 1184
PPP + + PPP P + + PPPP +
Sbjct: 351 PPPPYVYSSPPPSPYVYKSPPPPPYVYSSPPPPPY 385
>At1g15830.1 68414.m01900 expressed protein
Length = 483
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 847 PPPRXGXXPXVFXPXPPQGKXGGGXFXXGPGEPFXKK 737
PPP+ G P P K GGG PG P K+
Sbjct: 203 PPPKRGGGGEPVIPGAPPPKRGGGGEPVIPGAPLPKR 239
>At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family
protein
Length = 846
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = -1
Query: 887 PPKNXXXXGEKXPP--PPPEXXXPXGXXPXPXP 795
PP+ G PP PPP P G P P P
Sbjct: 768 PPEQMSRPGYSIPPYGPPPPYHTPHGQAPQPYP 800
>At5g35190.1 68418.m04170 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 328
Score = 29.1 bits (62), Expect = 7.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPPXFXGP 1193
PPP + + PPP PP + + + PPPP + P
Sbjct: 248 PPPPYVYSSPPP-PPYYSPSPEVSYK--SPPPPPYYSP 282
>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
extensin gi|1165322|gb|AAB53156; contains proline-rich
extensin domains, INTERPRO:IPR002965
Length = 443
Score = 29.1 bits (62), Expect = 7.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 1080 PPPXWGFXXPPPXPPXFXGAXLXFFXGGXPPPPXF 1184
PPP + + PPP P + + PPPP +
Sbjct: 281 PPPPYVYSSPPPPPYVYSSPPPPPYVYSSPPPPPY 315
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,624,481
Number of Sequences: 28952
Number of extensions: 495727
Number of successful extensions: 2825
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2557
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3865075392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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