Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H04_e416_16.seq
         (1545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        36   0.011
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    28   3.0  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    28   4.0  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
 Frame = -2

Query: 635  LYNSKIFQKLLESVI*KNRKYK----TVTKNFRFGFIICSNDKITKIFIRHFIFIYIKAV 468
            ++N+KI QK LE +  KNR Y+       KN      I  +D++        +    + +
Sbjct: 2991 IHNAKIKQKELEEIEEKNRLYRQREFNFDKNDYLKVFINYDDEVEPEVEPEVVIERKRFL 3050

Query: 467  QLNKSFWTLFIAFYS----YVVCTELINTGRY 384
            QL  +FW+L+   YS     +   +L+NTG Y
Sbjct: 3051 QLQFAFWSLYNEIYSEKMNVIPLEQLMNTGSY 3082


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 551 RFGFIICSNDKITKIFIRHFIFIYIKAVQLNKSFWTLFIAFYSYVVCTELI 399
           RF   ICS        +RHF  + +   Q N   W  +I   S V+CT L+
Sbjct: 331 RFIAFICSKFSTAPDLVRHFNGVALIISQANYDDWNPYIREIS-VLCTRLL 380


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/66 (24%), Positives = 25/66 (37%)
 Frame = +3

Query: 495 VSNKDFSNFVIATNYKTETEVFGDSFVFAIFLNNTFKELLKDFRVVQTTWWYKVLGANWN 674
           VSN  F      T    E      SFVF + +   F + L       + WW ++L +  N
Sbjct: 358 VSNASFPLDFQQTTVDAELAFVDRSFVFDLEIKKLFVQTLTPLNETCSEWWGELLASTCN 417

Query: 675 IHMGQI 692
             +  +
Sbjct: 418 TKLDNL 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,341,882
Number of Sequences: 5004
Number of extensions: 108569
Number of successful extensions: 227
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)