Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_H04_e416_16.seq
(1545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51290| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 1e-17
SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31) 67 3e-11
SB_34261| Best HMM Match : efhand (HMM E-Value=5.3e-14) 31 2.5
SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 29 7.5
>SB_51290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 88.6 bits (210), Expect = 1e-17
Identities = 72/248 (29%), Positives = 111/248 (44%), Gaps = 8/248 (3%)
Frame = +3
Query: 228 TSQNKESSCGCN-VDRDQKKYIMKENIFKPLLKEDHCPAGISKIKHSEEV-------MVL 383
TS+ ++ CGC+ + RD+++ E F K+ + I K +++ MV
Sbjct: 31 TSKKEQMECGCDKLKRDKRE---DEKKFVKYSKKANVDQDIQKASREKDLLGQRTNQMVR 87
Query: 384 IPAGVYQFGTDDIAIESDKEGPKRLVQLDSFYIDKYEVSNKDFSNFVIATNYKTETEVFG 563
I G + GT+ I D EGP R V+L FY+D YEVSN++F FV AT +KTE
Sbjct: 88 IEGGEFTMGTNKPYIVVDGEGPARKVRLRPFYMDIYEVSNREFELFVNATGHKTEVAA-- 145
Query: 564 DSFVFAIFLNNTFKELLKDFRVVQTTWWYKVLGANWNIHMGQIRIYPKLQDHPVTHISWN 743
+ V+ +W + G + +I I+ +HPV HISWN
Sbjct: 146 ----------------APWWLPVKGAYWRRPEGPDTDIRESIKMIFFDRMNHPVLHISWN 189
Query: 744 DARMYCKWRNGRLPN*G*MGGSLVXEGLQDTPSIPGGDKLFPXKKTYGQYLARNXSHHHL 923
DA +CKW RLP +L +G D P G++L K +
Sbjct: 190 DAVAFCKWSGKRLPTEAEFEYAL--KGGSDDTLYPWGNELLVNGKHMANLWQGRFPVENT 247
Query: 924 SKEGFFGS 947
+++G+ G+
Sbjct: 248 AEDGYEGT 255
Score = 31.5 bits (68), Expect = 1.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 877 KXMGNIWXGTFPTTTSAKKXFSGPNPXALVXPNXFG 984
K M N+W G FP +A+ + G P N +G
Sbjct: 232 KHMANLWQGRFPVENTAEDGYEGTCPVTAFPQNGYG 267
>SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31)
Length = 611
Score = 67.3 bits (157), Expect = 3e-11
Identities = 47/136 (34%), Positives = 69/136 (50%)
Frame = +3
Query: 375 MVLIPAGVYQFGTDDIAIESDKEGPKRLVQLDSFYIDKYEVSNKDFSNFVIATNYKTETE 554
MV + G+++ GT+ D E P R V++ +F ID+Y ++N+ F FV + +KTE E
Sbjct: 1 MVKLSGGIFRMGTNS-EDGKDGENPARDVRVKAFAIDRYPITNELFRAFVRSKKFKTEAE 59
Query: 555 VFGDSFVFAIFLNNTFKELLKDFRVVQTTWWYKVLGANWNIHMGQIRIYPKLQDHPVTHI 734
FG SF F F+ + +V Q+ + G I KL ++PV HI
Sbjct: 60 KFGWSFAFHTFVPENVRS-----KVTQSV---QPGGPGTTIK-------DKL-NYPVVHI 103
Query: 735 SWNDARMYCKWRNGRL 782
S+NDA YC W RL
Sbjct: 104 SYNDATAYCNWAGKRL 119
>SB_34261| Best HMM Match : efhand (HMM E-Value=5.3e-14)
Length = 148
Score = 31.1 bits (67), Expect = 2.5
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 201 IFLLLTQYVTSQNKESSCGCNV----DRDQKKYIMKENIFKPLLKEDHCPAGISKIKHSE 368
+FL L + + + KE C V D D K YI+ NI + L+K + P S+I+H
Sbjct: 67 MFLTLVRRLAKEQKEQKCLSRVFNEFDHDSKGYILPSNIRRVLIKFNIDP-NESEIEHMM 125
Query: 369 E 371
E
Sbjct: 126 E 126
>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 29.5 bits (63), Expect = 7.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 1447 GPPXXXPPRXXPXPGXPPP 1503
G P PPR P PG PPP
Sbjct: 386 GIPSPGPPRYGPGPGHPPP 404
>SB_44270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 29.5 bits (63), Expect = 7.5
Identities = 18/69 (26%), Positives = 19/69 (27%)
Frame = -2
Query: 1526 GXXXXXXXGGGXPGXGXXRGGXXXGGPGXXXXLXXGXKXKXGXGXGKTGXXRXXXAXXXG 1347
G GGG G G GG GG G G G G G A G
Sbjct: 417 GGSSAGASGGGHKGAG---GGSAAGGGTGSGSTGNGNAGNGGAGGGGAGGGSTGGASSSG 473
Query: 1346 XSGAXCEES 1320
+ S
Sbjct: 474 SKSSSSSAS 482
>SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.5 bits (63), Expect = 7.5
Identities = 20/77 (25%), Positives = 23/77 (29%)
Frame = -2
Query: 1502 GGGXPGXGXXRGGXXXGGPGXXXXLXXGXKXKXGXGXGKTGXXRXXXAXXXGXSGAXCEE 1323
GGG G G GG G G G G G A G +GA
Sbjct: 35 GGGGVGGGGGNGGGAGNGVGAGGCGCGGGNDGGNGGGGAGNGGGGGGAGNGGAAGAAGAG 94
Query: 1322 SXXTXXXGXEXPLGGKG 1272
+ G +GG G
Sbjct: 95 AGGNVGGGGSGGVGGNG 111
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 29.5 bits (63), Expect = 7.5
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Frame = -2
Query: 1538 GXXXGXXXXXXXGGGXPGXGXXRGGX-XXGGPGXXXXLXXGXKXKXGXGXGKTGXXRXXX 1362
G G GGG G G GG GG G G G G G TG
Sbjct: 41 GATGGHGGATGGGGGATGGGATGGGGGATGGGGGA---TGGHGGATGGGGGATGDGGGAT 97
Query: 1361 AXXXGXSG 1338
G +G
Sbjct: 98 GGGGGATG 105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,507,492
Number of Sequences: 59808
Number of extensions: 812392
Number of successful extensions: 2093
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1949
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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