Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H04_e416_16.seq
         (1545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.25 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   5.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   7.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.25
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +1

Query: 1390 PXPXPSXXFXPXXXXXXXPGPPXXXPPRXXPXPGXPP 1500
            P P PS    P       P  P   PP   P PG PP
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP-PGAPP 56


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 417 DIAIESDKEGPKRLVQLDSFYIDKYEVSNKDFSN 518
           D+  + +KE  + + + +S Y+D  EVS ++  N
Sbjct: 156 DVLFKQNKEEEQTINRKNSDYLDNQEVSMENTEN 189


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 672 SSLPQALYTTMSFVQLENLSKAP*KCYLKKSQIQNC 565
           +SL  A+   + F  L N  K    C LK    Q+C
Sbjct: 583 TSLQMAMKNPIEFTDLSNERKYEDVCVLKTDTNQSC 618


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,039
Number of Sequences: 438
Number of extensions: 9710
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 54190125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)