Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H02_e400_16.seq
         (1532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    29   7.4  
10_06_0084 - 10477880-10477897,10477940-10478002,10479523-104795...    29   9.8  

>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
            21800918-21800957,21801471-21801766,21802696-21802774,
            21803013-21803100,21803189-21803273,21803364-21803625,
            21803720-21805027,21806187-21806393,21807288-21807519,
            21808267-21808353,21808427-21808735,21808879-21808957,
            21809788-21809867,21809952-21810029,21810744-21810831,
            21811102-21811241,21811342-21811415,21812043-21812125,
            21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 231  IQKQLLRGSGERTKRVQNPQSNRDY-TYVTQLLKLITRRCHKLS 103
            +Q+++ RGSG++T+      + RD+ T +  +L+ +    H LS
Sbjct: 1947 VQEKMSRGSGKQTRNFTQEAAGRDHETEMHNVLEAVAAELHSLS 1990


>10_06_0084 -
           10477880-10477897,10477940-10478002,10479523-10479575,
           10479774-10480589,10480889-10480998,10481338-10482068
          Length = 596

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 782 CDAFIILXRSYKXTILHLWSHSPSLSCKKKIEXLNFYXGXLKXG 913
           C A + L   Y   +LH  SH  S SC++KIE L  +   L  G
Sbjct: 239 CTA-LSLCTQYLSEVLHSLSHLCSTSCEEKIEQLLAFWNTLYIG 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,629,848
Number of Sequences: 37544
Number of extensions: 545750
Number of successful extensions: 1135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4930895900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)