Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H02_e400_16.seq
         (1532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43150.1 68415.m05358 proline-rich extensin-like family prote...    31   2.0  
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t...    29   6.2  
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa...    29   8.1  
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa...    29   8.1  
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    29   8.1  

>At2g43150.1 68415.m05358 proline-rich extensin-like family protein
            similar to CRANTZ hydroxyproline-rich glycoprotein
            [Manihot esculenta] gi|7211797|gb|AAF40442; similar to
            extensin gi|1165322|gb|AAB53156; contains proline-rich
            extensin domains, INTERPRO:IPR002965
          Length = 212

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 1135 ETRGPX*PLAXPPXPWXXKRPPDPXXCPP 1221
            E + P  P+  PP P+  K PP P   PP
Sbjct: 41   EYKSPPPPVKSPPPPYEYKSPPPPVKSPP 69


>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
            transfer protein (LTP) family protein similar to
            hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
            carteri f. nagariensis GP|6523547; contains Pfam profile
            PF00234 Protease inhibitor/seed storage/LTP family
          Length = 375

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 1105 IXGRVXHXGXETRGPX*PLAXPPXPWXXKRPPDPXXCPP 1221
            + GR    G    GP   ++ PP P    +PP P   PP
Sbjct: 242  VCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPP 280


>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
            protein B, putative / snRNP-B, putative / Sm protein B,
            putative similar to SP|Q05856 Small nuclear
            ribonucleoprotein associated protein B (snRNP-B) (Sm
            protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 1181 QGXGGXASG*XGPRVSXPXXXTRPXIXXPP*GXXXGPPSG 1062
            +G GG A G   P++S P   + P I  PP      PP G
Sbjct: 133  RGVGGPAPGMMQPQISRPPQLSAPPIIRPPGQMLPPPPFG 172


>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
            protein B, putative / snRNP-B, putative / Sm protein B,
            putative similar to SP|Q05856 Small nuclear
            ribonucleoprotein associated protein B (snRNP-B) (Sm
            protein B) (Sm-B) (SmB) {Drosophila melanogaster}
          Length = 257

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 1181 QGXGGXASG*XGPRVSXPXXXTRPXIXXPP*GXXXGPPSG 1062
            +G GG A G   P++S P   + P I  PP      PP G
Sbjct: 133  RGVGGPAPGMMQPQISRPPQLSAPPIIRPPGQMLPPPPFG 172


>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
            extensin family protein contains similarity to disease
            resistance protein GI:3894383 from [Lycopersicon
            esculentum]; contains leucine-rich repeats, Pfam:PF00560;
            contains proline rich extensin domains,
            INTERPRO:IPR002965
          Length = 847

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 1147 PX*PLAXPPXPWXXKRPPDPXXCPPXXXHXP 1239
            P  P+  PP P     PP P   PP   H P
Sbjct: 595  PPPPVFSPPPPVFSPPPPSPVYSPPPPSHSP 625


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,214,025
Number of Sequences: 28952
Number of extensions: 418700
Number of successful extensions: 1156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4106040192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)