Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_H01_e392_15.seq
         (1527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X64435-1|CAA45773.1|  318|Caenorhabditis elegans collagen protein.     32   0.93 
U41624-3|AAF99944.1|  318|Caenorhabditis elegans Dumpy : shorter...    32   0.93 
U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical pr...    29   6.6  
AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical ...    29   6.6  

>X64435-1|CAA45773.1|  318|Caenorhabditis elegans collagen protein.
          Length = 318

 Score = 32.3 bits (70), Expect = 0.93
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +2

Query: 1394 PXGPXGXPXXXGXXXXQXGPXXPXXXPXPPKXXXSKGXXXPPXP 1525
            P GP G P   G      GP  P     PP     +G   PP P
Sbjct: 222  PRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGP 265


>U41624-3|AAF99944.1|  318|Caenorhabditis elegans Dumpy : shorter than
            wild-typeprotein 7 protein.
          Length = 318

 Score = 32.3 bits (70), Expect = 0.93
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +2

Query: 1394 PXGPXGXPXXXGXXXXQXGPXXPXXXPXPPKXXXSKGXXXPPXP 1525
            P GP G P   G      GP  P     PP     +G   PP P
Sbjct: 222  PRGPKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGPRGEPGPPGP 265


>U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical
           protein F53B3.1 protein.
          Length = 543

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +3

Query: 267 IKFDLTIECCELIVNKLMYTSRDAGTVYVCY-VTPSRHIYSTDPHKMLNTFCQRYRKGPN 443
           ++F   ++C + + N     + D    YVC+  TP R++  TD +++LN   +++ +G N
Sbjct: 354 VEFQQCLKCFKCVENDAEMANHDCELTYVCFECTPIRNL-CTD-NRLLN-HRKKFHRGAN 410

Query: 444 RFYIMTTDNLN*LT 485
             +  +  N+  LT
Sbjct: 411 SGFRCSFCNMKFLT 424


>AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical
           protein C17A2.2 protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 734 SPGNRVWTIKRYASKRVTMTDYDGAMTGWINNV 636
           S G+  WTI     +R+ MTDY G +  +I  V
Sbjct: 248 SRGHSKWTIFADLDERLVMTDYPGTILNYIREV 280


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,746,814
Number of Sequences: 27780
Number of extensions: 549095
Number of successful extensions: 1106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4390273854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)