Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G12_e479_14.seq
         (1522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.4  
SB_25744| Best HMM Match : MFS_1 (HMM E-Value=9.7e-23)                 30   5.6  

>SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 725 ITIXWPPFYXRGXWGNPXGXXXXXLXXXPLF 817
           ITI WP FY R  W NP       L   P F
Sbjct: 25  ITIHWPSFYKRRDWENPGVNQLNRLAAHPPF 55


>SB_25744| Best HMM Match : MFS_1 (HMM E-Value=9.7e-23)
          Length = 403

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 447 LYTRLCFCCGLAFIPLWFRQ 506
           L T LCFC GL  IP++F +
Sbjct: 121 LGTSLCFCSGLGIIPMYFEK 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,627,100
Number of Sequences: 59808
Number of extensions: 361411
Number of successful extensions: 2139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2139
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4941604117
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)