Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G12_e479_14.seq
         (1522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   1.7  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    25   2.3  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 429 LHIRTDLYTRLCFCCGLAFIPLWFRQ 506
           +HIRT      C  CG AF   W  Q
Sbjct: 34  MHIRTHTLPCKCHLCGKAFSRPWLLQ 59


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 523 PKPRPTCRNHKGMKASPQQKHSR 455
           P+ R   R+H G   SP++K  R
Sbjct: 2   PRTRRVKRSHNGKNGSPEEKRPR 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,714
Number of Sequences: 438
Number of extensions: 4140
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 53233125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)