Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G12_e479_14.seq
         (1522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein ...    31   2.0  
At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein ...    30   3.5  
At2g06845.1 68415.m00766 expressed protein                             30   3.5  
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ...    29   6.1  

>At3g48760.1 68416.m05325 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 476

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 316 PNSVHCTCVWGLNNTAEPLKNYLPWASRLVEFNFTKYFFIFALIYTL 456
           P + HC+     NN  E   ++ PW  + +     +++F+F L  TL
Sbjct: 169 PRASHCSIC---NNCVEKFDHHCPWLGQCIGLRNYRFYFMFVLCSTL 212


>At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 374

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 316 PNSVHCTCVWGLNNTAEPLKNYLPWASRLVEFNFTKYFFIFALIYTL 456
           P   HC+     NN  E   ++ PW  + +     +YFF+F    TL
Sbjct: 147 PRCSHCSIC---NNCVERFDHHCPWVGQCIGLRNYRYFFMFVSSSTL 190


>At2g06845.1 68415.m00766 expressed protein
          Length = 315

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 389 GLAVWLNLISPNISSYSH*FIHSTMLLLRTRFHPLVV 499
           G  ++LNL++P+ SS  H F  S  L  R  +  LVV
Sbjct: 6   GYRLFLNLVNPSASSVEHLFKSSDALFARAAYDHLVV 42


>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 443

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 316 PNSVHCTCVWGLNNTAEPLKNYLPWASRLVEFNFTKYFFIFALIYTL 456
           P   HC+     NN  E   ++ PW  + +     ++FF+F    TL
Sbjct: 160 PRCSHCSIC---NNCVERFDHHCPWVGQCIGMRNYRFFFMFVFSTTL 203


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,838,154
Number of Sequences: 28952
Number of extensions: 255510
Number of successful extensions: 470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4067485824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)