Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G11_e471_13.seq
         (1540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    64   5e-11
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   9.1  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   9.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   9.1  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   9.1  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
 Frame = +3

Query: 105 FSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRRPFKA 284
           F++EP NV+  N+ R++GL + KAVGV  N  R    I     K   KP K   +     
Sbjct: 30  FNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIAN 89

Query: 285 GARRSLFK--AKRLLKANHYRTDLTKATLRRASAILRSQRP 401
            + R  +K  A R+ +   YR DL K ++ RASAIL SQRP
Sbjct: 90  ASSRKTYKSIAGRIGRTG-YRDDLVKVSVARASAILSSQRP 129


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +3

Query: 63  GNSARGXKANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKAT 242
           GN+ +  +    KP  +EPN+  N     YN  +H  A       + +GF   +   +  
Sbjct: 9   GNTPKPSRCKRTKPIFREPNSPVN-GGLVYNHPLHTAAAVKEAFSENRGFRTCHVCHRKN 67

Query: 243 NKPVK 257
           N  +K
Sbjct: 68  NMRLK 72


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 886 SPRSLIXDSCSKLEQHSTLSRSILLIXK 803
           SP +L   +CS L  HST    + L+ +
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLLSQ 55


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +2

Query: 518 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 682
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 683 SCA 691
           S A
Sbjct: 232 SDA 234


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 625 PPFASWRNSEEARTDRPSQQLRSLN 699
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,518,328
Number of Sequences: 5004
Number of extensions: 79053
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 864227864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)