Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_G11_e471_13.seq
(1540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 67 4e-11
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 66 7e-11
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 65 1e-10
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 30 4.2
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 30 4.2
09_02_0036 + 3217163-3217584,3217752-3218322 30 4.2
08_01_0038 - 282431-283954 29 7.4
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667... 29 7.4
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 66.9 bits (156), Expect = 4e-11
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Frame = +3
Query: 90 NIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIV-YKKAKATNKPV---- 254
N K FSKEPNN+ N++SY+++GL +KK V V ++ ++ K + NKP
Sbjct: 28 NAKVQFSKEPNNLYNVHSYKHSGLANKKTVTVQPASGKETAVVLSTTKTEKQNKPASLYH 87
Query: 255 KNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 392
K+++R+ F+ A+ K + N+YR DLTK L R SA+ RS
Sbjct: 88 KSVMRKEFRKMAK----AVKNQVSDNYYRPDLTKPALARLSAVYRS 129
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 66.1 bits (154), Expect = 7e-11
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Frame = +3
Query: 87 ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIV-YKKAKATNKPVKNI 263
+N K F+KEPNN+ N++SY+++GL +KK V + + + ++ K K N P K
Sbjct: 27 SNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLY 86
Query: 264 IRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 392
+ + R+ K + N+YR DLTK L R S++ RS
Sbjct: 87 HKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 65.3 bits (152), Expect = 1e-10
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Frame = +3
Query: 87 ANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIV-YKKAKATNKPVKNI 263
+N K F+KEPNN+ N++SY+++GL +KK V + + + ++ K K N P K
Sbjct: 27 SNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLY 86
Query: 264 IRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRS 392
+ + R+ K + N+YR DLTK L R S++ RS
Sbjct: 87 HKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 604 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 747
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 604 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 747
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 4.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 542 ITIHWPSFYNVV-TGKTLALPNLIALQH 622
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>08_01_0038 - 282431-283954
Length = 507
Score = 29.5 bits (63), Expect = 7.4
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 675 FPTVAQ-PEWRMANCKR*YFVKIRVKFLLNQLIF*PIGRNRQNPLXIKRIDRDRVECCSS 851
FP++A+ P R C + Y VK R LL+QLI + R + L + D ++ S
Sbjct: 227 FPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLS 286
Query: 852 LEQE 863
++QE
Sbjct: 287 IQQE 290
>06_03_1314 +
29266320-29266346,29266463-29266556,29266663-29266712,
29266798-29266847,29266945-29267053,29267135-29267195,
29267291-29267343,29267629-29267721,29268091-29268166,
29268401-29268508,29268596-29268840
Length = 321
Score = 29.5 bits (63), Expect = 7.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 272 TTDNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIV---GFFAER 102
T + V+ F GC L+ A V L+D D F+ Q I++ V+H++ G F +
Sbjct: 107 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVAK 166
Query: 101 LF 96
+F
Sbjct: 167 IF 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,692,900
Number of Sequences: 37544
Number of extensions: 573403
Number of successful extensions: 1203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4954100116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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