Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G11_e471_13.seq
         (1540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    40   0.005
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    32   0.94 

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 39.9 bits (89), Expect = 0.005
 Identities = 33/101 (32%), Positives = 49/101 (48%)
 Frame = +3

Query: 93  IKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNIIRR 272
           I K FS E  N+  +NS +Y+GL +K A+ V  +   KG  +  K  K   +P K +   
Sbjct: 23  IGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAKGVVVSTKNEKG--RPAKAVTTS 78

Query: 273 PFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQ 395
                ++  +   +RL K N       K   RRA+AI+RSQ
Sbjct: 79  TL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIVRSQ 115


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -3

Query: 266 DNVLYRFIGCLGLLINYREALSVRILNDTDGFLMDQAIVSIRVEVSHIVGFFAERLFDVR 87
           D+   + +GC  LL++Y  +  V I N TDG  M    V+I + +SH++    E     R
Sbjct: 92  DDYTAKSMGC-DLLVHYGHSCLVPIQN-TDGIAMLYVFVNIHINLSHLIDCVKENFQGKR 149

Query: 86  L 84
           L
Sbjct: 150 L 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,485,483
Number of Sequences: 27780
Number of extensions: 469101
Number of successful extensions: 829
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4431789446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)