Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G11_e471_13.seq
         (1540 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    68   1e-11
At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            66   6e-11
At2g40070.1 68415.m04923 expressed protein                             32   0.88 
At1g57770.1 68414.m06554 amine oxidase family contains similarit...    31   2.0  

>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
 Frame = +3

Query: 84  KANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPV--- 254
           + N K  FSKE NN+ N+NSY+++GL +KK V +      +G  +   K K  NKP    
Sbjct: 26  RGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSV 85

Query: 255 -KNIIRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQR 398
            K+I+++ F   +R S   A +++  N+YR DL KA L R SAI +  R
Sbjct: 86  NKSILKKEF---SRMSKVVANQVVD-NYYRPDLKKAALARLSAISKGLR 130


>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 66.1 bits (154), Expect = 6e-11
 Identities = 37/105 (35%), Positives = 54/105 (51%)
 Frame = +3

Query: 84  KANIKKPFSKEPNNVTNLNSYRYNGLIHKKAVGVVENPDRKGFTIVYKKAKATNKPVKNI 263
           + N K  FSKE NN+TN++SY+++GL +KK V +      +   +   K K  NKP  ++
Sbjct: 26  RGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSV 85

Query: 264 IRRPFKAGARRSLFKAKRLLKANHYRTDLTKATLRRASAILRSQR 398
            +   K    R        +  N+YR DL KA L R SAI +  R
Sbjct: 86  NKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLR 130


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 32.3 bits (70), Expect = 0.88
 Identities = 22/78 (28%), Positives = 29/78 (37%)
 Frame = +1

Query: 844  VPVWNKSPLLKNVDSNVKGRKPXXQGDGPLRXXXPIKFFGVEVPKALXRTLXEPPIXTLT 1023
            +P  +K+P L    S     +P    D P         F +E P  L  TL E P+    
Sbjct: 349  MPTPSKNPALSRAASPTVRSRPWKPSDMP--------GFSLETPPNLRTTLPERPLSATR 400

Query: 1024 GKPXTXXERKGKXXRSGP 1077
            G+P     R G     GP
Sbjct: 401  GRPGAPSSRSGSVEPGGP 418


>At1g57770.1 68414.m06554 amine oxidase family contains similarity
           to carotenoid isomerase [Lycopersicon esculentum]
           GI:19550437, phytoene dehydrogenase (PDH1) GI:433144
           from (Cercospora nicotianae); contains Pfam profile
           PF01593 amine oxidase, flavin-containing
          Length = 574

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 24  RPLLXTSGIPRAAGNSARGXKANIKKPFSKEP 119
           RP + +S   R++ +S+     N+K+PFS EP
Sbjct: 20  RPTIRSSSFIRSSSSSSASSNGNLKEPFSGEP 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,541,216
Number of Sequences: 28952
Number of extensions: 439481
Number of successful extensions: 832
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4125317376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)