Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G10_e463_14.seq
         (1543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.56 
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    29   2.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   4.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   4.0  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    27   6.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   9.1  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    27   9.1  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   9.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 1425 APAXGAXXGXPXPPGXXXXXPPAPPXGPP 1511
            AP  G     P PPG     PP PP  PP
Sbjct: 755  APIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 232 LFSSRVITKLRGVYKRTDRRNLLYNAMHIYQFYIYNVKKSY 354
           +F +R +  L+    R     ++ N+MH+YQF   N  KSY
Sbjct: 84  IFIARRMQSLQTFLDRCSTHPVISNSMHMYQFLENNSWKSY 124


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +3

Query: 1419 SXAPAXGAXXGXPXPPGXXXXXPPAPP--XGPPXXPP 1523
            S AP   +    P PP      P APP   GPP  PP
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -1

Query: 1534 PXXXGGXXGGPXGGAGGXXXXXPGGXGXP 1448
            P   GG  GG  GG GG     PGG G P
Sbjct: 244  PGGFGGGLGGFGGGPGGFGGG-PGGHGGP 271


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
 Frame = -1

Query: 1519 GXXGGPXGGAGGXXXXXPGGX-------GXPXXAPXAGAXDP 1415
            G  GGP  G GG     PGG        G P  A    A DP
Sbjct: 80   GAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQFFSASDP 121


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 663 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 827
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 828 SCA 836
           S A
Sbjct: 232 SDA 234


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 423 NYSTAQYNHW*RMYSVFLYKSKNVRF 346
           NYS  +Y  W   +  F + SKNV+F
Sbjct: 39  NYSDIRYKKWMANFLWFGFSSKNVKF 64


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 770 PPFASWRNSEEARTDRPSQQLRSLN 844
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,698,303
Number of Sequences: 5004
Number of extensions: 85923
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 866210038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)