Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G10_e463_14.seq
         (1543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    32   0.94 
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    32   0.94 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    32   0.94 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    32   0.94 
U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific ...    32   1.2  
U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific...    32   1.2  
U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    31   2.2  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    31   2.2  
Z81038-2|CAB02757.1|  454|Caenorhabditis elegans Hypothetical pr...    30   3.8  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    30   3.8  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    30   3.8  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    30   5.0  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    29   6.7  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    29   8.8  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    29   8.8  
Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical p...    29   8.8  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    29   8.8  

>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical protein
            C50F7.5 protein.
          Length = 309

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 1419 SXAPAXGAXXGXPXPPGXXXXXPPAPPXGPPXXPPXXHG 1535
            S  P+     G P PPG     PP PP  P   PP   G
Sbjct: 235  SDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGPPG 273



 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 1455 PXPPGXXXXXPPAPPXGPPXXPPXXHG 1535
            P PPG     PP PP  P   PP   G
Sbjct: 258  PGPPGPPTRRPPGPPGPPTRRPPGHQG 284


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +3

Query: 1416 GSXAPAXGAXXGXPXPPGXXXXXPPAPPXGPPXXPP 1523
            GS +P      G P PP      PP PP G P  PP
Sbjct: 251  GSGSPPPPPAAGSPPPP--RTGSPPPPPTGSPPPPP 284



 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 1432 PXXPXXGXPPXRGXGXXXPPPRPXAPXXPP 1521
            P  P  G PP    G   PPPR  +P  PP
Sbjct: 272  PPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 301



 Score = 29.9 bits (64), Expect = 5.0
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 1432 PXXPXXGXPPXRGXGXXXPPPRPXAPXXPP 1521
            P  P  G PP  G G   PPP P A   PP
Sbjct: 239  PPPPPKGSPPLAGSG--SPPPPPAAGSPPP 266


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +3

Query: 1416 GSXAPAXGAXXGXPXPPGXXXXXPPAPPXGPPXXPP 1523
            GS +P      G P PP      PP PP G P  PP
Sbjct: 272  GSGSPPPPPAAGSPPPP--RTGSPPPPPTGSPPPPP 305



 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 1432 PXXPXXGXPPXRGXGXXXPPPRPXAPXXPP 1521
            P  P  G PP    G   PPPR  +P  PP
Sbjct: 293  PPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 322



 Score = 29.9 bits (64), Expect = 5.0
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 1432 PXXPXXGXPPXRGXGXXXPPPRPXAPXXPP 1521
            P  P  G PP  G G   PPP P A   PP
Sbjct: 260  PPPPPKGSPPLAGSG--SPPPPPAAGSPPP 287


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 32.3 bits (70), Expect = 0.94
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +3

Query: 1416 GSXAPAXGAXXGXPXPPGXXXXXPPAPPXGPPXXPP 1523
            GS +P      G P PP      PP PP G P  PP
Sbjct: 257  GSGSPPPPPAAGSPPPP--RTGSPPPPPTGSPPPPP 290



 Score = 31.1 bits (67), Expect = 2.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 1432 PXXPXXGXPPXRGXGXXXPPPRPXAPXXPP 1521
            P  P  G PP    G   PPPR  +P  PP
Sbjct: 278  PPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 307



 Score = 29.9 bits (64), Expect = 5.0
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 1432 PXXPXXGXPPXRGXGXXXPPPRPXAPXXPP 1521
            P  P  G PP  G G   PPP P A   PP
Sbjct: 245  PPPPPKGSPPLAGSG--SPPPPPAAGSPPP 272


>U64609-7|AAB04604.3|  373|Caenorhabditis elegans Sperm-specific
            family, class qprotein 4 protein.
          Length = 373

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 1519 GXXGGPXGGAGGXXXXXPGGXGXPXXAPXAGA 1424
            G  GGP GG GG      GG G P  +   GA
Sbjct: 322  GVGGGPVGGGGGGAKSGGGGGGIPGQSVYMGA 353


>U40802-12|AAK19014.2|  265|Caenorhabditis elegans Sperm-specific
            family, class qprotein 3 protein.
          Length = 265

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 1519 GXXGGPXGGAGGXXXXXPGGXGXPXXAPXAGA 1424
            G  GGP GG GG      GG G P  +   GA
Sbjct: 216  GVGGGPVGGGGGGAKSGGGGGGIPGQSVYMGA 247


>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
            protein F25B5.7c protein.
          Length = 282

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 19/60 (31%), Positives = 19/60 (31%)
 Frame = +3

Query: 1356 PTGXGXXXGSXRTGXTRXXXGSXAPAXGAXXGXPXPPGXXXXXPPAPPXGPPXXPPXXHG 1535
            P G G   G    G      G   P      G P PPG      P  P GP    P  HG
Sbjct: 168  PGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGP-PPGQGGPGGPGGPGGPGGMLPKSHG 226


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
            protein F25B5.7a protein.
          Length = 562

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 19/60 (31%), Positives = 19/60 (31%)
 Frame = +3

Query: 1356 PTGXGXXXGSXRTGXTRXXXGSXAPAXGAXXGXPXPPGXXXXXPPAPPXGPPXXPPXXHG 1535
            P G G   G    G      G   P      G P PPG      P  P GP    P  HG
Sbjct: 448  PGGMGGPPGHGGMGGPPGHGGQGGPPGHGGMGGP-PPGQGGPGGPGGPGGPGGMLPKSHG 506


>Z81038-2|CAB02757.1|  454|Caenorhabditis elegans Hypothetical protein
            C25A1.4 protein.
          Length = 454

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 18/48 (37%), Positives = 19/48 (39%)
 Frame = -1

Query: 1522 GGXXGGPXGGAGGXXXXXPGGXGXPXXAPXAGAXDPXXXRVXPVRXEP 1379
            GG  G   GGAGG     P   G       AGA  P   RV  +R  P
Sbjct: 348  GGNAG--VGGAGGATFAQPDVFGVNGAGGLAGAATPQATRVIIIRNLP 393


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
            protein Y56A3A.27 protein.
          Length = 759

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = -1

Query: 1522 GGXXGGPXGGAGGXXXXXPGGXGXPXXAPXAGAXDPXXXRVXPVR 1388
            GG  GGP GG G       GG G P   P A    P   R  P R
Sbjct: 615  GGGPGGPGGGGGPPRGPGGGGGGGP-TGPPAPPKPPAKPRGRPPR 658


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisomerase
            III protein.
          Length = 759

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 18/45 (40%), Positives = 18/45 (40%)
 Frame = -1

Query: 1522 GGXXGGPXGGAGGXXXXXPGGXGXPXXAPXAGAXDPXXXRVXPVR 1388
            GG  GGP GG G       GG G P   P A    P   R  P R
Sbjct: 615  GGGPGGPGGGGGPPRGPGGGGGGGP-TGPPAPPKPPAKPRGRPPR 658


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
            51 protein.
          Length = 435

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +3

Query: 1416 GSXAPAXGAXXGXPXPPGXXXXXPPAPPXGPPXXPPXXHG 1535
            G+  PA GA  G P P G     PP  P GPP  PP   G
Sbjct: 190  GNAGPA-GAP-GVPGPDGDAGSPPPPGPPGPP-GPPGNDG 226



 Score = 29.9 bits (64), Expect = 5.0
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -1

Query: 1522 GGXXGGPXGGAGGXXXXXPGGXGXPXXAPXAGA 1424
            GG  GG    AGG      GG G P  AP   A
Sbjct: 363  GGGGGGGGAAAGGGYNAGGGGGGAPQAAPAPQA 395


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical protein
            T21B4.2 protein.
          Length = 312

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -1

Query: 1507 GPXGGAGGXXX-XXPGGXGXPXXAPXAGAXDP 1415
            GP G AG       PGG G P   P  GA  P
Sbjct: 172  GPAGPAGNAGPPGAPGGPGAPGNTPSGGAAGP 203


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical protein
            ZK863.2 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 1425 APAXGAXXGXPXPPGXXXXXPPAPPXGPP 1511
            A A G   G P PPG      PA P G P
Sbjct: 96   AQASGCPAGPPGPPGPDGSAGPAGPAGNP 124


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical protein
            ZK863.2 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 1425 APAXGAXXGXPXPPGXXXXXPPAPPXGPP 1511
            A A G   G P PPG      PA P G P
Sbjct: 96   AQASGCPAGPPGPPGPDGSAGPAGPAGNP 124


>Z77662-14|CAI79239.1|  245|Caenorhabditis elegans Hypothetical
            protein F47B8.13 protein.
          Length = 245

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 19/56 (33%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
 Frame = -1

Query: 1522 GGXXGGPXGGAGGXXXXXPGGXG--XPXXAPXAGAXDPXXXRVXPVRXEPXXXPXP 1361
            GG  GG  GG GG      GG G   P   P A A         P    P   P P
Sbjct: 12   GGGGGGGGGGGGGGEAGYSGGAGVEAPPPPPPADAAPAPAPEPAPAPA-PEAVPAP 66


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
            protein Y51H4A.9 protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = +3

Query: 1419 SXAPAXGAXXGXPXPPGXXXXXPPAP-PXGPPXXP 1520
            S  P      G P  PG     P AP P GPP  P
Sbjct: 252  SGQPGSNGNVGAPGAPGQVVDVPGAPGPAGPPGPP 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,445,997
Number of Sequences: 27780
Number of extensions: 565897
Number of successful extensions: 2373
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2153
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4442168344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)