Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G10_e463_14.seq
         (1543 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family...    32   0.88 
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /...    32   0.88 
At4g01985.1 68417.m00265 expressed protein                             29   8.2  

>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
            protein contains proline-rich extensin domains,
            INTERPRO:IPR002965
          Length = 205

 Score = 32.3 bits (70), Expect = 0.88
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 1455 PXPPGXXXXXPPAPPXGPPXXPPXXH 1532
            P PP      PP PP  PP  PP  H
Sbjct: 23   PVPPPPSHISPPPPPFSPPHHPPPPH 48


>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
            polygalacturonase (pectinase) family protein similar to
            polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
            (Glycine max); contains PF00295: Glycosyl hydrolases
            family 28 (polygalacturonases)
          Length = 491

 Score = 32.3 bits (70), Expect = 0.88
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 1455 PXPPGXXXXXPPAPPXGPPXXP 1520
            P PP      PP PP GPP  P
Sbjct: 48   PKPPSSSISQPPTPPPGPPDSP 69


>At4g01985.1 68417.m00265 expressed protein
          Length = 579

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -1

Query: 1522 GGXXGGPXGGAGGXXXXXPGGXGXPXXAPXAG 1427
            GG  GG  GGA G      GG G    +  AG
Sbjct: 394  GGASGGASGGASGGASGGVGGAGGAGGSVGAG 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,682,878
Number of Sequences: 28952
Number of extensions: 508099
Number of successful extensions: 2031
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4134955968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)