Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_G09_e455_13.seq
(1566 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein. 97 2e-19
AK127270-1|BAC86909.1| 248|Homo sapiens protein ( Homo sapiens ... 66 2e-10
AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein. 60 2e-08
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 60 2e-08
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 58 7e-08
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 57 2e-07
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 57 2e-07
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 57 2e-07
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 57 2e-07
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro... 57 2e-07
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 57 2e-07
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 56 3e-07
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 54 1e-06
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 54 2e-06
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 54 2e-06
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 54 2e-06
AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein. 52 4e-06
AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein pro... 50 3e-05
M74509-1|AAA73090.1| 395|Homo sapiens protein ( Human endogenou... 47 2e-04
AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein. 47 2e-04
U87590-1|AAB63113.1| 198|Homo sapiens polymerase protein. 44 0.002
U87591-1|AAB63114.1| 198|Homo sapiens polymerase protein. 44 0.002
AJ233629-1|CAA13575.1| 109|Homo sapiens reverse transcriptase p... 43 0.003
U87593-1|AAB63116.1| 201|Homo sapiens polymerase protein. 43 0.004
DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein. 41 0.011
U87592-1|AAB63115.1| 201|Homo sapiens polymerase protein. 41 0.014
AJ233632-1|CAA13576.1| 109|Homo sapiens reverse transcriptase p... 40 0.033
AF016000-1|AAB71676.1| 81|Homo sapiens reverse transcriptase p... 39 0.057
D00408-1|BAA00310.1| 503|Homo sapiens cytochrome P-450 HFLa pro... 32 5.0
BC067436-1|AAH67436.1| 503|Homo sapiens cytochrome P450, family... 32 5.0
AF315325-1|AAG48618.1| 535|Homo sapiens cytochrome P450 variant... 32 5.0
AF280107-3|AAG32289.1| 503|Homo sapiens cytochrome P450 polypep... 32 5.0
>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
Length = 1183
Score = 97.1 bits (231), Expect = 2e-19
Identities = 81/285 (28%), Positives = 138/285 (48%), Gaps = 14/285 (4%)
Frame = +3
Query: 72 TRGIIKPSQSDFASPIV-LAKKKNGKYRLCVDYR--KLNTKIIKERFPLPLIEDQIDRLK 242
T G+I P QS + +P++ + + K Y D R K T + P P + +
Sbjct: 192 TFGMIVPCQSPWNTPLLPVPEPKTKDYWPGQDLRLVKQATVTLHPAVPNPYTLLGLLPAE 251
Query: 243 DAMMFTSLDLQNGFFHVNVNKDSQKYTSFV--TPRG----QYEFTKMPFGLCTAPSVF-Q 401
D+ FT LDL++ FF + +SQK +F P QY +T +P G +P++F +
Sbjct: 252 DSC-FTCLDLKDAFFSIRFAPESQKLFAFQWEDPESGVTTQYTWTWLPQGFKNSPTIFGE 310
Query: 402 RFINDVFQDLILD-GTVL-SYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIF 575
D+ + D G VL Y+DDL+L + + + E+ G + +K
Sbjct: 311 ELARDLQKCPTRDLGCVLLQYVDDLLLGHPTAVGCAKGTDALLRHLEDCGYKVSKKKAQI 370
Query: 576 MQKQINYLGYIVFDGQISPSKEKVAAVANFKMPRNIKSLQSFLGLTGYFRKFIKNYSLIA 755
+ Q+ YLG+ + G+ S E+ + P++ K ++ FLG G+ R +I N++++A
Sbjct: 371 CRPQVRYLGFTIRQGERSLGSERKQVICTLPEPKSRKQVRKFLGAAGFCRLWIPNFAVLA 430
Query: 756 KPLTDLLKKG--VIFNFDLDCEKAYEELKNILCQSPVLKIYDPNL 884
KPL ++ K G F + ++A+ ELK L +P L + PNL
Sbjct: 431 KPLYEVTKWGDREPFEWGSQQQQAFRELKEKLMSAPALGL--PNL 473
>AK127270-1|BAC86909.1| 248|Homo sapiens protein ( Homo sapiens
cDNA FLJ45337 fis, clone BRHIP3007960. ).
Length = 248
Score = 66.5 bits (155), Expect = 2e-10
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 4/212 (1%)
Frame = +3
Query: 255 FTSLDLQNGFFHVNVNKDSQKYTSFVTPRGQYEFTKMPFGLCTAPSVFQRFI-NDVFQDL 431
+ ++DL N FF + V+K QK +F QY FT +P +P++ I D+ L
Sbjct: 5 YAAIDLANAFFSIPVHKAHQKQFAFSWQGQQYTFTVLPQRYSNSPALCHNLIRRDLDCFL 64
Query: 432 ILDG-TVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQKQINYLGYI 608
+L T++ Y+DD++L E E L+++ + G N K + +LG +
Sbjct: 65 LLQSITLVHYIDDIMLIGSSEQEVASTLDLLVRHLYARGWEINPTKIKETSTSVKFLG-V 123
Query: 609 VFDG--QISPSKEKVAAVANFKMPRNIKSLQSFLGLTGYFRKFIKNYSLIAKPLTDLLKK 782
+ G Q PSK K + + P K Q LG G++R+ + P+ + K
Sbjct: 124 QWCGACQDIPSKVK-DKLLHLATPTTKKEAQCLLGRFGFWRQHGPYLGALLWPIYQVTSK 182
Query: 783 GVIFNFDLDCEKAYEELKNILCQSPVLKIYDP 878
F + + EKA ++++ + + +L +DP
Sbjct: 183 AASFEWGPEQEKALQQVQAAVQAALLLGPHDP 214
>AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein.
Length = 863
Score = 60.5 bits (140), Expect = 2e-08
Identities = 56/249 (22%), Positives = 119/249 (47%), Gaps = 15/249 (6%)
Frame = +3
Query: 78 GIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKI-----IKERFPLPLIEDQIDRLK 242
G ++PS S + +P+ + KKK+GKY+L D R +N ++ ++ P+P + +
Sbjct: 52 GHLQPSTSPWNTPVFVIKKKSGKYQLLHDLRAVNQQMQPMGALQPGLPVPTM------IP 105
Query: 243 DAMMFTSLDLQNGFFHVNVN-KDSQKYTSFVT------PRGQYEFTKMPFGLCTAPSVFQ 401
LDL++ FF + ++ +D Q++ V P +YE+ +P G+ +P++ Q
Sbjct: 106 KHWPLIVLDLKDCFFSIPLHEQDIQRFAFTVPSINHQGPDKRYEWKVLPQGMTNSPAICQ 165
Query: 402 RFINDVFQDL---ILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCI 572
+++ + + +L Y+DDL+++ + E +++ E+ GL E+ I
Sbjct: 166 LYVDQAVEPVRQQCPKVQILHYMDDLLITAESESHLMEAYKLLLLYLEKVGLQVAPER-I 224
Query: 573 FMQKQINYLGYIVFDGQISPSKEKVAAVANFKMPRNIKSLQSFLGLTGYFRKFIKNYSLI 752
+ + YLG V +++P + ++A + + Q G + R + K +
Sbjct: 225 QKGEVVQYLGLKVTSEKVTPLEFEIA----IDGLQTLNDFQKLCGNLNWLRPYCKLTTED 280
Query: 753 AKPLTDLLK 779
PL ++L+
Sbjct: 281 MMPLFNILE 289
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 60.5 bits (140), Expect = 2e-08
Identities = 49/202 (24%), Positives = 101/202 (50%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 42 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 100
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFVT------PRGQYEFTKMPFGLCTAPSVFQRFI 410
+ T +DL++ FF + + +D +K+ ++ P ++++ +P G+ +P++ Q F+
Sbjct: 101 LIT-IDLKDCFFTIPLAEQDCEKFAFTISAINNKEPATRFQWKVLPQGMLNSPTICQTFV 159
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ Y+DD++ + + + + + GL +K I
Sbjct: 160 GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 218
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 219 TPFHYLGMQIENRKIKPQKIEI 240
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 58.4 bits (135), Expect = 7e-08
Identities = 48/202 (23%), Positives = 100/202 (49%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 42 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 100
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYT------SFVTPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ ++ P ++++ +P G+ +P++ Q F+
Sbjct: 101 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINYKEPATRFQWKVLPQGMLNSPTICQTFV 159
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ Y+DD++ + + + + + GL +K I
Sbjct: 160 GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 218
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 219 TPFHYLGMQIENRKIKPQKIEI 240
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 57.2 bits (132), Expect = 2e-07
Identities = 48/202 (23%), Positives = 99/202 (49%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 59 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 117
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 118 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 176
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ Y+DD++ + + + + + GL +K I
Sbjct: 177 GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 235
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 236 TPFHYLGMQIENRKIKPQKIEI 257
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 57.2 bits (132), Expect = 2e-07
Identities = 48/202 (23%), Positives = 99/202 (49%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 59 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 117
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 118 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 176
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ Y+DD++ + + + + + GL +K I
Sbjct: 177 GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 235
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 236 TPFHYLGMQIENRKIKPQKIEI 257
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 57.2 bits (132), Expect = 2e-07
Identities = 48/202 (23%), Positives = 99/202 (49%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 59 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 117
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 118 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 176
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ Y+DD++ + + + + + GL +K I
Sbjct: 177 GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 235
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 236 TPFHYLGMQIENRKIKPQKIEI 257
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 56.8 bits (131), Expect = 2e-07
Identities = 48/202 (23%), Positives = 99/202 (49%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 982 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-LIQPMGPLQPGLPSPAMIPKDWP 1040
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 1041 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 1099
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ Y+DD++ + + + + + GL +K I
Sbjct: 1100 GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 1158
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 1159 TPFHYLGMQIENRKIKPQKIEI 1180
>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1177
Score = 56.8 bits (131), Expect = 2e-07
Identities = 48/199 (24%), Positives = 97/199 (48%), Gaps = 11/199 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 982 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 1040
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 1041 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 1099
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ Y+DD++ + + + + + GL +K I
Sbjct: 1100 GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVASAGLAIASDK-IQTS 1158
Query: 582 KQINYLGYIVFDGQISPSK 638
+YLG + + +I P K
Sbjct: 1159 TPFHYLGMQIENRKIKPQK 1177
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 56.8 bits (131), Expect = 2e-07
Identities = 48/202 (23%), Positives = 99/202 (49%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 58 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-LIQPMGPLQPGLPSPAMIPKDWP 116
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 117 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 175
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ Y+DD++ + + + + + GL +K I
Sbjct: 176 GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 234
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 235 TPFHYLGMQIENRKIKPQKIEI 256
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 56.4 bits (130), Expect = 3e-07
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 58 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 116
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ P++ Q F+
Sbjct: 117 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNNPTICQTFV 175
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ Y+DD++ + + + + + GL +K I
Sbjct: 176 GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 234
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K +V
Sbjct: 235 TPFHYLGMQIENRKIKPQKIEV 256
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 54.0 bits (124), Expect = 1e-06
Identities = 47/202 (23%), Positives = 97/202 (48%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+ D R +N +I+ PL P + KD
Sbjct: 982 KGHIEPSFSPWNSPVFVIQKKSGKWHTLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 1040
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 1041 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 1099
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ Y+DD++ + + + + + GL +K I
Sbjct: 1100 GRALQPVREKFSDCYIIHYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 1158
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 1159 TPFHYLGMQIENRKIKPQKIEI 1180
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 53.6 bits (123), Expect = 2e-06
Identities = 47/202 (23%), Positives = 98/202 (48%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 982 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 1040
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 1041 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 1099
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ +DD++ + + + + + GL +K I
Sbjct: 1100 GRALQPVREKFSDCYIIHCIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 1158
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 1159 TPFHYLGMQIENRKIKPQKIEI 1180
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 53.6 bits (123), Expect = 2e-06
Identities = 47/202 (23%), Positives = 98/202 (48%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 59 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 117
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 118 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 176
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ +DD++ + + + + + GL +K I
Sbjct: 177 GRALQPVREKFSDCYIIHCIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 235
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 236 TPFHYLGMQIENRKIKPQKIEI 257
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 53.6 bits (123), Expect = 2e-06
Identities = 47/202 (23%), Positives = 98/202 (48%), Gaps = 11/202 (5%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 59 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 117
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 118 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 176
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ +DD++ + + + + + GL +K I
Sbjct: 177 GRALQPVREKFSDCYIIHCIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 235
Query: 582 KQINYLGYIVFDGQISPSKEKV 647
+YLG + + +I P K ++
Sbjct: 236 TPFHYLGMQIENRKIKPQKIEI 257
>AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 52.4 bits (120), Expect = 4e-06
Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 11/228 (4%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 42 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 100
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ P++ Q F+
Sbjct: 101 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPPTRFQWKVLPQGMLNNPTICQTFV 159
Query: 411 NDVFQ---DLILDGTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQ 581
Q + D ++ +DD++ + + + + + GL +K I
Sbjct: 160 GRALQPVREKFSDCYIIHCIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTS 218
Query: 582 KQINYLGYIVFDGQISPSKEKVAAVANFKMPRNIKSLQSFLGLTGYFR 725
+YLG + + +I P K ++ + + LQ LG + R
Sbjct: 219 TPFHYLGMQIENRKIKPQKIEIRK----DTLKTLNDLQKLLGDINWIR 262
>AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1117
Score = 49.6 bits (113), Expect = 3e-05
Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAM 251
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL P + KD
Sbjct: 982 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWP 1040
Query: 252 MFTSLDLQNGFFHVNV-NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFI 410
+ +DL++ FF + + +D +K+ + P ++++ +P G+ +P++ Q F+
Sbjct: 1041 LII-IDLKDCFFTIPLAEQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFV 1099
Query: 411 NDVFQ 425
Q
Sbjct: 1100 GRALQ 1104
>M74509-1|AAA73090.1| 395|Homo sapiens protein ( Human endogenous
retrovirus type C oncovirus sequence. ).
Length = 395
Score = 46.8 bits (106), Expect = 2e-04
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Frame = +3
Query: 81 IIKPSQSDFASPIVLAKKKNGK-YRLCVDYRKLNTKIIKERFPLPLIEDQIDRLK-DAMM 254
II P QS + +P++ K K YR D R +N + +P + + L +
Sbjct: 192 IIVPCQSPWNTPLLPVPKPGTKDYRPVQDLRLVNQATVTLHPTVPNLYTLLGLLPAEDSW 251
Query: 255 FTSLDLQNGFFHVNVNKDSQKYTSF--VTPRG----QYEFTKMPFGLCTAPSVF-QRFIN 413
FT LDL++ FF + + + QK +F P QY +T++P +P++F +
Sbjct: 252 FTCLDLKDAFFSIRLAPERQKLFAFQWEDPESGVTTQYTWTQLPQRFKNSPTIFGEALAR 311
Query: 414 DV--FQDLILDGTVLSYLDDLIL 476
D+ F L +L Y+DDL+L
Sbjct: 312 DLQKFPTRDLGCVLLQYVDDLLL 334
>AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.
Length = 1819
Score = 46.8 bits (106), Expect = 2e-04
Identities = 32/106 (30%), Positives = 52/106 (49%)
Frame = +3
Query: 594 YLGYIVFDGQISPSKEKVAAVANFKMPRNIKSLQSFLGLTGYFRKFIKNYSLIAKPLTDL 773
YLG I +DG+ +P ++ +A +A +P N +L F+G R I +Y + PL L
Sbjct: 985 YLG-IPWDGK-APCQQVLAHLAQLTIPSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSL 1042
Query: 774 LKKGVIFNFDLDCEKAYEELKNILCQSPVLKIYDPNLETXLHTDAS 911
LK+ + +D + E+A+ LK L + L + L L S
Sbjct: 1043 LKQKPDWQWDQEHEEAFLALKRALVSALCLMAPNSQLPFRLEVTVS 1088
>U87590-1|AAB63113.1| 198|Homo sapiens polymerase protein.
Length = 198
Score = 44.0 bits (99), Expect = 0.002
Identities = 41/184 (22%), Positives = 87/184 (47%), Gaps = 11/184 (5%)
Frame = +3
Query: 129 KKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAMMFTSLDLQNGFFHVNV-N 302
+KK+GK+R+ D R +N +I+ PL P + KD + +DL++ FF + +
Sbjct: 3 QKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSPAMIPKDWPLII-IDLKDCFFTIPLAE 60
Query: 303 KDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFINDVFQ---DLILDGTVLS 455
+D +K+ + P ++++ +P G+ +P++ Q F+ Q + D ++
Sbjct: 61 QDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIH 120
Query: 456 YLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQKQINYLGYIVFDGQISPS 635
Y+DD++ + + + + + GL +K I +YLG + + +I P
Sbjct: 121 YIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTSTPFHYLGMQIENRKIKPQ 179
Query: 636 KEKV 647
K ++
Sbjct: 180 KIEI 183
>U87591-1|AAB63114.1| 198|Homo sapiens polymerase protein.
Length = 198
Score = 43.6 bits (98), Expect = 0.002
Identities = 41/184 (22%), Positives = 87/184 (47%), Gaps = 11/184 (5%)
Frame = +3
Query: 129 KKKNGKYRLCVDYRKLNTKIIKERFPL-PLIEDQIDRLKDAMMFTSLDLQNGFFHVNV-N 302
+KK+GK+R+ D R +N +I+ PL P + KD + +DL++ FF + +
Sbjct: 3 QKKSGKWRMLTDLRAVNA-LIQPMGPLQPGLPSPAMIPKDWPLII-IDLKDCFFTIPLAE 60
Query: 303 KDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFINDVFQ---DLILDGTVLS 455
+D +K+ + P ++++ +P G+ +P++ Q F+ Q + D ++
Sbjct: 61 QDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYIIH 120
Query: 456 YLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQKQINYLGYIVFDGQISPS 635
Y+DD++ + + + + + GL +K I +YLG + + +I P
Sbjct: 121 YIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IRTSTPFHYLGMQIENRKIKPQ 179
Query: 636 KEKV 647
K ++
Sbjct: 180 KIEI 183
>AJ233629-1|CAA13575.1| 109|Homo sapiens reverse transcriptase
protein.
Length = 109
Score = 43.2 bits (97), Expect = 0.003
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Frame = +3
Query: 150 RLCVDYRKLNTKIIKERFPLPLIEDQIDRLKDA--MMFTSLDLQNGFFHVNVNKDSQKYT 323
R+ V Y +LN + +P + ++++ + + + DL N FF + V+K QK
Sbjct: 1 RMSVGYCRLNQVVTPIVAAVPDVVSLLEQINTSPGTWYAATDLANAFFSILVHKAHQKQF 60
Query: 324 SFVTPRGQYEFTKMPFGLCTAPSVFQRFI---NDVFQDLILDGTVLSYLD 464
+F QY FT +P G +P++ I D F L D T++ Y+D
Sbjct: 61 AFTWQGQQYAFTVLPQGYINSPALCHNLIWRDPDCFL-LPQDITLVPYID 109
>U87593-1|AAB63116.1| 201|Homo sapiens polymerase protein.
Length = 201
Score = 42.7 bits (96), Expect = 0.004
Identities = 38/185 (20%), Positives = 84/185 (45%), Gaps = 12/185 (6%)
Frame = +3
Query: 129 KKKNGKYRLCVDYRKLN--TKIIKERFPLPLIEDQIDRLKDAMMFTSLDLQNGFFHVNV- 299
+KK+GK+R+ D R +N +I+ PL + + +DL++ FF + +
Sbjct: 3 QKKSGKWRMLTDLRAVNAVNAVIQPMGPLQPGLPSLAMIPKDWPLIIIDLKDCFFTIPLA 62
Query: 300 NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFINDVFQ---DLILDGTVL 452
+D +K+ + P ++++ +P G+ +P++ Q F+ Q + D ++
Sbjct: 63 EQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYII 122
Query: 453 SYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQKQINYLGYIVFDGQISP 632
Y+DD++ + + + + + GL +K I +YLG + + +I P
Sbjct: 123 HYIDDILCAAETKDKLIDCYTFLQAEVANAGLAIASDK-IQTSTPFHYLGMQIENRKIKP 181
Query: 633 SKEKV 647
K ++
Sbjct: 182 PKIEI 186
>DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein.
Length = 135
Score = 41.1 bits (92), Expect = 0.011
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +3
Query: 75 RGIIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPLPLIEDQIDRLKDAMM 254
+G I+PS S + SP+ + +KK+GK+R+ D R +N +I+ PL + +
Sbjct: 48 KGHIEPSFSPWNSPVFVIQKKSGKWRMLTDLRAVNA-VIQPMGPLQPGLPSLAMIPKDWP 106
Query: 255 FTSLDLQNGFFHVNV-NKDSQKYTSFVTP 338
+DL++ FF + + +D +K+ +F P
Sbjct: 107 LIIIDLKDCFFTIPLAEQDCEKF-AFTIP 134
>U87592-1|AAB63115.1| 201|Homo sapiens polymerase protein.
Length = 201
Score = 40.7 bits (91), Expect = 0.014
Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Frame = +3
Query: 129 KKKNGKYRLCVDYRKLN--TKIIKERFPLPLIEDQIDRLKDAMMFTSLDLQNGFFHVNV- 299
+KK+GK+R+ D R +N +I+ PL + + +DL++ FF + +
Sbjct: 3 QKKSGKWRMLTDLRAVNAVNAVIQPMGPLQPGLPSLAMIPKDWPLIIIDLKDCFFTIPLA 62
Query: 300 NKDSQKYTSFV------TPRGQYEFTKMPFGLCTAPSVFQRFINDVFQ---DLILDGTVL 452
+D +K+ + P ++++ +P G+ +P++ Q F+ Q + D ++
Sbjct: 63 EQDCEKFAFTIPAINNKEPATRFQWKVLPQGMLNSPTICQTFVGRALQPVREKFSDCYII 122
Query: 453 SYLDDLI 473
Y+DD++
Sbjct: 123 HYIDDIL 129
>AJ233632-1|CAA13576.1| 109|Homo sapiens reverse transcriptase
protein.
Length = 109
Score = 39.5 bits (88), Expect = 0.033
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = +3
Query: 150 RLCVDYRKLN---TKIIKERFPLPLIEDQIDRLKDAMMFTSLDLQNGFFHVNVNKDSQKY 320
R+ VDYRKLN T + + +QI+ D + + DL N F + V+K QK
Sbjct: 1 RMIVDYRKLNKGSTPTAAAVSDVVSLLEQINTSPDTW-YVATDLANAFCSIPVHKAHQKQ 59
Query: 321 TSFVTPRGQYEFTKMPFGLCTAPSVFQRFINDVFQDLIL--DGTVLSYLD 464
+F +Y FT + G +P++ + L D T+ Y+D
Sbjct: 60 FAFGWQGQEYTFTVLSQGYINSPALCHNLVQRDLDHFSLPQDITLFHYID 109
>AF016000-1|AAB71676.1| 81|Homo sapiens reverse transcriptase
protein.
Length = 81
Score = 38.7 bits (86), Expect = 0.057
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +3
Query: 129 KKKNGKYRLCVDYRKLNTKIIKERFPLPLIEDQIDRLKDAMMFTSLDLQNGFFHVNVNKD 308
+KK+GK+R D R +NT +IK L + +A +DL++ FFH+ ++K
Sbjct: 2 QKKSGKWRTVTDLRAVNT-VIKPMGALQPSMPSPSVIPEAWPLIIIDLKDCFFHIPLDKS 60
Query: 309 SQKYTSFVTP 338
+ +F TP
Sbjct: 61 DCEKFAFTTP 70
>D00408-1|BAA00310.1| 503|Homo sapiens cytochrome P-450 HFLa
protein.
Length = 503
Score = 32.3 bits (70), Expect = 5.0
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 777 KKGVIFNFDLDCEKAYEELKNIL-CQSPVLKIYDPNL 884
+KG + FD++C K Y ++ I CQ P+L I DP++
Sbjct: 54 RKGY-WTFDMECYKKYRKVWGIYDCQQPMLAITDPDM 89
>BC067436-1|AAH67436.1| 503|Homo sapiens cytochrome P450, family 3,
subfamily A, polypeptide 7 protein.
Length = 503
Score = 32.3 bits (70), Expect = 5.0
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 777 KKGVIFNFDLDCEKAYEELKNIL-CQSPVLKIYDPNL 884
+KG + FD++C K Y ++ I CQ P+L I DP++
Sbjct: 54 RKGY-WTFDMECYKKYRKVWGIYDCQQPMLAITDPDM 89
>AF315325-1|AAG48618.1| 535|Homo sapiens cytochrome P450 variant
3A7 protein.
Length = 535
Score = 32.3 bits (70), Expect = 5.0
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 777 KKGVIFNFDLDCEKAYEELKNIL-CQSPVLKIYDPNL 884
+KG + FD++C K Y ++ I CQ P+L I DP++
Sbjct: 54 RKGY-WTFDMECYKKYRKVWGIYDCQQPMLAITDPDM 89
>AF280107-3|AAG32289.1| 503|Homo sapiens cytochrome P450
polypeptide 7 protein.
Length = 503
Score = 32.3 bits (70), Expect = 5.0
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 777 KKGVIFNFDLDCEKAYEELKNIL-CQSPVLKIYDPNL 884
+KG + FD++C K Y ++ I CQ P+L I DP++
Sbjct: 54 RKGY-WTFDMECYKKYRKVWGIYDCQQPMLAITDPDM 89
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,475,081
Number of Sequences: 237096
Number of extensions: 3279277
Number of successful extensions: 4353
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 4207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4348
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 23302260226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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